CXCL1 C-X-C motif chemokine ligand 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: CXCL1provided by VGNC
Official Full Name: C-X-C motif chemokine ligand 1provided by VGNC
Primary source: VGNC:VGNC:8658
Locus tag: CK820_G0003479
See related: Ensembl:ENSPTRG00000016157
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human all
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Genomic context

Location:: chromosome: 4

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	3	NC_072401.2 (56240127..56241913, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	4	NC_072402.1 (56240101..56241967, complement)

Chromosome 3 - NC_072401.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

RH17698 (e-PCR)
- UniSTS:48395

SHGC4-1010 (e-PCR)
- UniSTS:92438

G33800 (e-PCR)
- UniSTS:12068

D4S2819 (e-PCR)
- UniSTS:30030

SHGC-67281 (e-PCR)
- UniSTS:76400

RH119675 (e-PCR)
- UniSTS:133044

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables chemokine activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in chemotaxis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in defense response	IEA Inferred from Electronic Annotation more info	PubMed
involved_in immune response	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: growth-regulated alpha protein

Names: chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

56240127..56241913 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001156094.8 → XP_001156094.1 growth-regulated alpha protein

See identical proteins and their annotated locations for XP_001156094.1

UniProtKB/TrEMBL

A0A2J8PFG9, A0A6D2XEA6, H2QPN5, K7C287

Related

ENSPTRP00000027773.4

Conserved Domains (1) summary

cd00273
Location:40 → 102

Chemokine_CXC; 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members contain an RCxC motif ...