U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

OXCT1 3-oxoacid CoA-transferase 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 737468, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
OXCT1provided by VGNC
Official Full Name
3-oxoacid CoA-transferase 1provided by VGNC
Primary source
VGNC:VGNC:4113
Locus tag
CK820_G0035942
See related
Ensembl:ENSPTRG00000016829
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See OXCT1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (70939987..71087500)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (71129191..71276704)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene F-box protein 4 Neighboring gene bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like Neighboring gene RAB7A interacting MON1-CCZ1 complex subunit 1 Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene T-complex protein 1 subunit alpha-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables succinyl-CoA:3-oxo-acid CoA-transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ketone body catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
Names
succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
NP_001267310.1
XP_009447466.4
XP_009447467.4
XP_016808295.3
XP_063666251.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280381.1 → NP_001267310.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

    See identical proteins and their annotated locations for NP_001267310.1

    Status: PROVISIONAL

    Source sequence(s)
    AK307018
    UniProtKB/TrEMBL
    A0A2I3T5J5, G2HJV4
    Related
    ENSPTRP00000084492.1, ENSPTRT00000079503.1
    Conserved Domains (3) summary
    COG1788
    Location:64 → 297
    AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
    COG4670
    Location:71 → 540
    YdiF; Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]
    cl00339
    Location:323 → 531
    SugarP_isomerase; SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ...

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    70939987..71087500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009449191.5 → XP_009447466.4  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

    UniProtKB/TrEMBL
    K7AMG2

  2. XM_009449192.5 → XP_009447467.4  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X3

  3. XM_016952806.4 → XP_016808295.3  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X2

  4. XM_063810181.1 → XP_063666251.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous