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TAF5 TATA-box binding protein associated factor 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 735428, updated on 29-Mar-2024

Summary

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Official Symbol
TAF5provided by VGNC
Official Full Name
TATA-box binding protein associated factor 5provided by VGNC
Primary source
VGNC:VGNC:5804
Locus tag
CK820_G0004040
See related
Ensembl:ENSPTRG00000002909
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 8 NC_072406.2 (115474113..115494848)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 10 NC_072408.1 (106088341..106109076)

Chromosome 8 - NC_072406.2Genomic Context describing neighboring genes Neighboring gene internexin neuronal intermediate filament protein alpha Neighboring gene U11 spliceosomal RNA Neighboring gene polycomb group ring finger 6 Neighboring gene ATP synthase membrane subunit k Neighboring gene microRNA mir-1307 Neighboring gene programmed cell death 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 5
Names
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa
TBP-associated factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072406.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    115474113..115494848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001135279.6 → XP_001135279.1  transcription initiation factor TFIID subunit 5

    UniProtKB/TrEMBL
    A0A2I3RHH7, A0A2J8PCT9, A0A6D2XFB7, H2Q2I6
    Related
    ENSPTRP00000005124.4
    Conserved Domains (3) summary
    cd08044
    Location:211 → 343
    TAF5_NTD2; TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)
    cd00200
    Location:472 → 739
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:473 → 541
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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