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NR2F2 nuclear receptor subfamily 2 group F member 2 [ Homo sapiens (human) ]

Gene ID: 7026, updated on 7-Apr-2024

Summary

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Official Symbol
NR2F2provided by HGNC
Official Full Name
nuclear receptor subfamily 2 group F member 2provided by HGNC
Primary source
HGNC:HGNC:7976
See related
Ensembl:ENSG00000185551 MIM:107773; AllianceGenome:HGNC:7976
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ARP1; ARP-1; CHTD4; NF-E3; SRXX5; SVP40; COUPTF2; COUPTFB; TFCOUP2; COUPTFII
Summary
This gene encodes a member of the steroid thyroid hormone superfamily of nuclear receptors. The encoded protein is a ligand inducible transcription factor that is involved in the regulation of many different genes. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010]
Expression
Broad expression in ovary (RPKM 74.0), endometrium (RPKM 37.8) and 20 other tissues See more
Orthologs
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Genomic context

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See NR2F2 in Genome Data Viewer
Location:
15q26.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (96326046..96340263)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (94090629..94104848)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (96869275..96883492)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268156 Neighboring gene NR2F2 antisense RNA 1 Neighboring gene uncharacterized LOC105370997 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:96723470-96723970 Neighboring gene NANOG hESC enhancer GRCh37_chr15:96726277-96726778 Neighboring gene uncharacterized LOC124903584 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:96794933-96796132 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:96811550-96812164 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:96816434-96817633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6852 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:96876956-96877918 Neighboring gene Sharpr-MPRA regulatory region 11279 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:96884589-96885109 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:96885110-96885629 Neighboring gene uncharacterized LOC101927263 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:96897481-96898380 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:96901703-96902545 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:96905583-96906432 Neighboring gene microRNA 1469 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:96934820-96936019 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:96943980-96944194 Neighboring gene Sharpr-MPRA regulatory region 9726 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:96959267-96960130 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:96960131-96960994 Neighboring gene tubulin alpha pseudogene 12 Neighboring gene phosphoglycerate mutase 1 pseudogene 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Expanding the clinical spectrum of pathogenic variation in NR2F2: Asplenia. Arsov T, et al. Eur J Med Genet, 2021 Dec. PMID 34619368
  2. Decidual NR2F2-Expressing CD4(+) T Cells Promote TH2 Transcriptional Program During Early Pregnancy. Lin Y, et al. Front Immunol, 2021. PMID 34084171, Free PMC Article
  3. The absence of (TCAGGG)(n) repeats in some telomeres, combined with variable responses to NR2F2 depletion, suggest that this nuclear receptor plays an indirect role in the alternative lengthening of telomeres. Alhendi ASN, et al. Sci Rep, 2020 Nov 26. PMID 33244044, Free PMC Article
  4. NR2F2 plays a major role in insulin-induced epithelial-mesenchymal transition in breast cancer cells. Xia B, et al. BMC Cancer, 2020 Jul 6. PMID 32631390, Free PMC Article
  5. The Coup-TFII orphan nuclear receptor is an activator of the γ-globin gene. Fugazza C, et al. Haematologica, 2021 Feb 1. PMID 32107331, Free PMC Article

See all (151) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An epigenetic switch controls an alternative NR2F2 isoform that unleashes a metastatic program in melanoma.
    Title: An epigenetic switch controls an alternative NR2F2 isoform that unleashes a metastatic program in melanoma.
  2. Heterozygous rare variants in NR2F2 cause a recognizable multiple congenital anomaly syndrome with developmental delays.
    Title: Heterozygous rare variants in NR2F2 cause a recognizable multiple congenital anomaly syndrome with developmental delays.
  3. Inflammation and DKK1-induced AKT activation contribute to endothelial dysfunction following NR2F2 loss.
    Title: Inflammation and DKK1-induced AKT activation contribute to endothelial dysfunction following NR2F2 loss.
  4. The nuclear receptors SF1 and COUP-TFII cooperate on the Insl3 promoter in Leydig cells.
    Title: The nuclear receptors SF1 and COUP-TFII cooperate on the Insl3 promoter in Leydig cells.
  5. Abnormal hsa_circ_0003948 expression affects chronic periodontitis development by regulating miR-144-3p/NR2F2/PTEN signaling.
    Title: Abnormal hsa_circ_0003948 expression affects chronic periodontitis development by regulating miR-144-3p/NR2F2/PTEN signaling.
  6. Expanding the clinical spectrum of pathogenic variation in NR2F2: Asplenia.
    Title: Expanding the clinical spectrum of pathogenic variation in NR2F2: Asplenia.
  7. Exome sequencing of fetuses with congenital diaphragmatic hernia supports a causal role for NR2F2, PTPN11, and WT1 variants.
    Title: Exome sequencing of fetuses with congenital diaphragmatic hernia supports a causal role for NR2F2, PTPN11, and WT1 variants.
  8. Decidual NR2F2-Expressing CD4(+) T Cells Promote TH2 Transcriptional Program During Early Pregnancy.
    Title: Decidual NR2F2-Expressing CD4(+) T Cells Promote TH2 Transcriptional Program During Early Pregnancy.
  9. YAP1 overexpression contributes to the development of enzalutamide resistance by induction of cancer stemness and lipid metabolism in prostate cancer.
    Title: YAP1 overexpression contributes to the development of enzalutamide resistance by induction of cancer stemness and lipid metabolism in prostate cancer.
  10. The Coup-TFII orphan nuclear receptor is an activator of the gamma-globin gene.
    Title: The Coup-TFII orphan nuclear receptor is an activator of the γ-globin gene.
Submit: New GeneRIF Correction See all GeneRIFs (93)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
46,xx sex reversal 5
MedGen: C5394441 OMIM: 618901 GeneReviews: Not available
Compare labs
Congenital heart defects, multiple types, 4
MedGen: C4014310 OMIM: 615779 GeneReviews: Not available
Compare labs

Copy number response

Description
Copy number response
Haploinsufficency

No evidence available (Last evaluated 2012-07-10)

ClinGen Genome Curation Page
Triplosensitivity

No evidence available (Last evaluated 2012-07-10)

ClinGen Genome Curation Page

EBI GWAS Catalog

Description
A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.
EBI GWAS Catalog
A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
EBI GWAS Catalog
Genetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
EBI GWAS Catalog
Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.
EBI GWAS Catalog
Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC117452

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nuclear receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nuclear receptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables retinoic acid binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables retinoic acid binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in anatomical structure development IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
  
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in female gonad development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in fertilization IEA
Inferred from Electronic Annotation
more info
  
involved_in forebrain development IEA
Inferred from Electronic Annotation
more info
  
involved_in interneuron migration IEA
Inferred from Electronic Annotation
more info
  
involved_in intracellular receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in lymphatic endothelial cell fate commitment IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in maternal placenta development IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of endothelial cell migration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of endothelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in placenta blood vessel development IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of systemic arterial blood pressure IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in radial pattern formation IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II TAS
Traceable Author Statement
more info
 PubMed 
involved_in response to estradiol IEA
Inferred from Electronic Annotation
more info
  
involved_in skeletal muscle tissue development IEA
Inferred from Electronic Annotation
more info
  
involved_in trophoblast giant cell differentiation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
COUP transcription factor 2
Names
ADP-ribosylation factor related protein 1
COUP transcription factor II
apolipoprotein A-I regulatory protein 1
apolipoprotein AI regulatory protein 1
chicken ovalbumin upstream promoter transcription factor 2
chicken ovalbumin upstream promoter-transcription factor I

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016753.1 RefSeqGene

    Range
    9773..19331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001145155.2 → NP_001138627.1  COUP transcription factor 2 isoform b

    See identical proteins and their annotated locations for NP_001138627.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus compared to isoform a.
    Source sequence(s)
    AC016251, BC106083
    Consensus CDS
    CCDS45358.1
    UniProtKB/Swiss-Prot
    P24468
    Related
    ENSP00000401674.2, ENST00000421109.6
    Conserved Domains (1) summary
    cd06948
    Location:44 → 278
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  2. NM_001145156.1 → NP_001138628.1  COUP transcription factor 2 isoform c

    See identical proteins and their annotated locations for NP_001138628.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3 and 4 both encode isoform c.
    Source sequence(s)
    AC016251, AK316086
    Consensus CDS
    CCDS45359.1
    UniProtKB/Swiss-Prot
    P24468
    Related
    ENSP00000377726.2, ENST00000394171.6
    Conserved Domains (1) summary
    cd06948
    Location:24 → 258
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  3. NM_001145157.2 → NP_001138629.1  COUP transcription factor 2 isoform c

    See identical proteins and their annotated locations for NP_001138629.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3 and 4 both encode isoform c.
    Source sequence(s)
    AC016251, BC034585
    Consensus CDS
    CCDS45359.1
    UniProtKB/Swiss-Prot
    P24468
    Related
    ENSP00000389853.2, ENST00000453270.2
    Conserved Domains (1) summary
    cd06948
    Location:24 → 258
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  4. NM_021005.4 → NP_066285.1  COUP transcription factor 2 isoform a

    See identical proteins and their annotated locations for NP_066285.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AC016251, BC042897
    Consensus CDS
    CCDS10375.1
    UniProtKB/Swiss-Prot
    B4DQJ2, B6ZGU1, P24468, Q03754, Q3KQR7
    UniProtKB/TrEMBL
    F1D8R0, F1DAL8
    Related
    ENSP00000377721.3, ENST00000394166.8
    Conserved Domains (2) summary
    cd06948
    Location:177 → 411
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:79 → 151
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    96326046..96340263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    94090629..94104848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P24468.1 GenPept UniProtKB/Swiss-Prot:P24468

Gene LinkOut

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