Larp7-ps La ribonucleoprotein 7, transcriptional regulator, pseudogene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Larp7-psprovided by MGI
Official Full Name: La ribonucleoprotein 7, transcriptional regulator, pseudogeneprovided by MGI
Primary source: MGI:MGI:3650864
See related: Ensembl:ENSMUSG00000066107 AllianceGenome:MGI:3650864
Gene type: pseudo
RefSeq status: INFERRED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm12666
Summary: Predicted to enable 7SK snRNA binding activity and U6 snRNA binding activity. Predicted to be involved in box C/D RNA 3'-end processing and regulation of mRNA splicing, via spliceosome. Predicted to be part of small nuclear ribonucleoprotein complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in testis adult (RPKM 4.4), CNS E11.5 (RPKM 1.4) and 8 other tissues See more
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Genomic context

Location:: 4 C5; 4 43.16 cM

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	4	NC_000070.7 (92078980..92079987, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	4	NC_000070.6 (92190743..92191750, complement)

Chromosome 4 - NC_000070.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Larp7 (e-PCR), detects polymorphism
- UniSTS:479079

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables 7SK snRNA binding	ISO Inferred from Sequence Orthology more info
enables U6 snRNA binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in U6 2'-O-snRNA methylation	ISO Inferred from Sequence Orthology more info
involved_in box C/D sno(s)RNA 3'-end processing	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of viral transcription	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of protein localization to Cajal body	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of snRNA transcription by RNA polymerase II	ISO Inferred from Sequence Orthology more info
involved_in regulation of mRNA splicing, via spliceosome	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
part_of 7SK snRNP	ISO Inferred from Sequence Orthology more info
located_in cytosol	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
part_of ribonucleoprotein complex	ISO Inferred from Sequence Orthology more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.