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Gpr88 G-protein coupled receptor 88 [ Mus musculus (house mouse) ]

Gene ID: 64378, updated on 11-Apr-2024

Summary

Official Symbol
Gpr88provided by MGI
Official Full Name
G-protein coupled receptor 88provided by MGI
Primary source
MGI:MGI:1927653
See related
Ensembl:ENSMUSG00000068696 AllianceGenome:MGI:1927653
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Strg
Summary
Enables cytoskeletal motor activity. Involved in motor learning. Acts upstream of or within locomotory behavior; neuromuscular process controlling balance; and neuronal action potential. Predicted to be located in several cellular components, including cilium; nucleus; and plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; ear; genitourinary system; and skeleton. Orthologous to human GPR88 (G protein-coupled receptor 88). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 16.3), CNS E18 (RPKM 8.2) and 9 other tissues See more
Orthologs
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Genomic context

See Gpr88 in Genome Data Viewer
Location:
3 50.23 cM; 3 G1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (116043304..116047123, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (116249654..116253540, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26544 Neighboring gene STARR-seq mESC enhancer starr_08770 Neighboring gene predicted gene, 31651 Neighboring gene STARR-seq mESC enhancer starr_08771 Neighboring gene predicted gene, 46839 Neighboring gene STARR-seq mESC enhancer starr_08772 Neighboring gene CDC14 cell division cycle 14A Neighboring gene STARR-seq mESC enhancer starr_08773 Neighboring gene STARR-positive B cell enhancer ABC_E10208 Neighboring gene STARR-seq mESC enhancer starr_08775 Neighboring gene STARR-positive B cell enhancer ABC_E2097 Neighboring gene STARR-positive B cell enhancer ABC_E3463 Neighboring gene predicted gene, 40125

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (6)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled photoreceptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables G protein-coupled receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables beta2-adrenergic receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables cytoskeletal motor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables transmembrane signaling receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in ciliary membrane ISO
Inferred from Sequence Orthology
more info
 
located_in cilium ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
G protein-coupled receptor 88
Names
probable G-protein coupled receptor 88
striatum-specific G-protein coupled receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001411424.1NP_001398353.1  G protein-coupled receptor 88

    Status: VALIDATED

    Source sequence(s)
    AC122888
    UniProtKB/Swiss-Prot
    Q9EPB7
    UniProtKB/TrEMBL
    B2RXU4
  2. NM_001411425.1NP_001398354.1  G protein-coupled receptor 88

    Status: VALIDATED

    Source sequence(s)
    AC122888
    UniProtKB/Swiss-Prot
    Q9EPB7
    UniProtKB/TrEMBL
    B2RXU4
  3. NM_001411426.1NP_001398355.1  G protein-coupled receptor 88

    Status: VALIDATED

    Source sequence(s)
    AC122888
    UniProtKB/Swiss-Prot
    Q9EPB7
    UniProtKB/TrEMBL
    B2RXU4
  4. NM_022427.3NP_071872.1  G protein-coupled receptor 88

    See identical proteins and their annotated locations for NP_071872.1

    Status: VALIDATED

    Source sequence(s)
    AC122888
    Consensus CDS
    CCDS38610.1
    UniProtKB/Swiss-Prot
    Q9EPB7
    UniProtKB/TrEMBL
    B2RXU4
    Related
    ENSMUSP00000087959.6, ENSMUST00000090473.7
    Conserved Domains (2) summary
    cd14964
    Location:3458
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:33347
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    116043304..116047123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)