Casp7 caspase 7 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Casp7provided by RGD
Official Full Name: caspase 7provided by RGD
Primary source: RGD:620944
See related: Ensembl:ENSRNOG00000056216 AllianceGenome:RGD:620944
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Enables cysteine-type peptidase activity. Involved in several processes, including aging; leukocyte apoptotic process; and striated muscle cell differentiation. Located in cytosol and intracellular membrane-bounded organelle. Biomarker of several diseases, including endometritis; sciatic neuropathy; transient cerebral ischemia; type 2 diabetes mellitus; and ureteral obstruction. Human ortholog(s) of this gene implicated in Alzheimer's disease; breast cancer; colon cancer; and lung non-small cell carcinoma. Orthologous to human CASP7 (caspase 7). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Liver (RPKM 47.5), Heart (RPKM 47.1) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q55

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (265442647..265481938)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (255437438..255476737)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (277190557..277242779)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Early activation of caspase-7 and 12 during glucose deprivation, while caspase-3 activity increased only transiently during glucose reintroduction. Inhibition of caspase-3/7 and calpain, significantly decreased caspase-12 activity.
Title: Glucose deprivation induces reticulum stress by the PERK pathway and caspase-7- and calpain-mediated caspase-12 activation.
Adenosine 2A receptor (A2AR) antagonist and small interference RNA knockdown of A2AR blocked cordycepin-induced apoptosis, p53 activation, and caspase-7 and PARP cleavage.
Title: Cordycepin induces apoptosis of C6 glioma cells through the adenosine 2A receptor-p53-caspase-7-PARP pathway.
The present finding therefore provided crucial evidence to explain neuroprotective effect of neural stem cell grafts in hemisected spinal cord, which is associated with BDNF upregulation and caspase-7 downregulation.
Title: Neural stem cells grafts decrease neural apoptosis associated with caspase-7 downregulation and BDNF upregulation in rats following spinal cord hemisection.
Administration of probiotic supernatants of E. coli Nissle 1917 and Lactobacillus rhamnosus GG decreased casp7 activity (a marker of apoptosis) in 5-fluorouracil treated intestinal epithelial cells.
Title: Probiotic factors partially prevent changes to caspases 3 and 7 activation and transepithelial electrical resistance in a model of 5-fluorouracil-induced epithelial cell damage.
Caspase-7, associated with caspase-3, apoptosis and inflammation, might be involved in long-term ischemia/reperfusion and immunosuppressive injury, at least in part through the Fas-signalling pathway.
Title: Caspase-7, Fas and FasL in long-term renal ischaemia/reperfusion and immunosuppressive injuries in rats.
While caspase-7 expression also increased within cortical and hippocampal neuronal populations in response to the same seizure patterns, caspase-7 was not proteolytically activated.
Title: Expression and differential processing of caspases 6 and 7 in relation to specific epileptiform EEG patterns following limbic seizures.
Activation of caspase 7 protein after acute brain injury, demonstrated by increase of activated caspase 7 in cortex and hippocampus, is up-regulated in neurons and astrocytes and may contribute to neuronal cell death on a scale not previously recognized.
Title: Caspase 7: increased expression and activation after traumatic brain injury in rats.
caspase-2, -3, and -7 are present in an active form on apoptotic cell surfaces and caspase inhibitors attenuate their elastolytic activity in rat smooth muscle cells
Title: Caspases from apoptotic myocytes degrade extracellular matrix: a novel remodeling paradigm.

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General gene information

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Markers

RH134331 (e-PCR)
- UniSTS:217613

Casp7 (e-PCR), detects polymorphism
- UniSTS:515960

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables RNA binding	ISO Inferred from Sequence Orthology more info
enables aspartic-type endopeptidase activity	ISO Inferred from Sequence Orthology more info
enables cysteine-type endopeptidase activity	ISO Inferred from Sequence Orthology more info
enables cysteine-type endopeptidase activity involved in apoptotic process	ISO Inferred from Sequence Orthology more info
enables cysteine-type endopeptidase activity involved in execution phase of apoptosis	IBA Inferred from Biological aspect of Ancestor more info
enables cysteine-type endopeptidase activity involved in execution phase of apoptosis	ISO Inferred from Sequence Orthology more info
enables cysteine-type peptidase activity	IDA Inferred from Direct Assay more info	PubMed
enables peptidase activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in apoptotic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in apoptotic process	ISO Inferred from Sequence Orthology more info
involved_in cellular response to lipopolysaccharide	ISO Inferred from Sequence Orthology more info
involved_in cellular response to staurosporine	ISO Inferred from Sequence Orthology more info
acts_upstream_of defense response to bacterium	ISO Inferred from Sequence Orthology more info
involved_in execution phase of apoptosis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within execution phase of apoptosis	ISO Inferred from Sequence Orthology more info
involved_in execution phase of apoptosis	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within fibroblast apoptotic process	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within heart development	ISO Inferred from Sequence Orthology more info
involved_in leukocyte apoptotic process	IEP Inferred from Expression Pattern more info	PubMed
involved_in lymphocyte apoptotic process	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within neuron apoptotic process	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of neuron apoptotic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of positive regulation of plasma membrane repair	ISO Inferred from Sequence Orthology more info
involved_in protein catabolic process	IDA Inferred from Direct Assay more info	PubMed
involved_in protein catabolic process	ISO Inferred from Sequence Orthology more info
involved_in protein maturation	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within protein processing	ISO Inferred from Sequence Orthology more info
involved_in proteolysis	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within response to UV	ISO Inferred from Sequence Orthology more info
involved_in striated muscle cell differentiation	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	ISO Inferred from Sequence Orthology more info
is_active_in cytosol	ISO Inferred from Sequence Orthology more info
located_in cytosol	ISO Inferred from Sequence Orthology more info
is_active_in extracellular space	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: caspase-7

NP_071596.1

EC 3.4.22.60

XP_008758769.1

EC 3.4.22.60

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_022260.4 → NP_071596.1 caspase-7

See identical proteins and their annotated locations for NP_071596.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000001

UniProtKB/TrEMBL

A0A0G2K9Z4, A6JI19, O88550, Q6IRF9

Related

ENSRNOP00000075193.2, ENSRNOT00000080511.2

Conserved Domains (1) summary

cd00032
Location:60 → 301

CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

265442647..265481938

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_008760547.4 → XP_008758769.1 caspase-7 isoform X1

See identical proteins and their annotated locations for XP_008758769.1

UniProtKB/TrEMBL

A0A0G2K9Z4, A0A8I5ZQU7, A6JI22

Related

ENSRNOP00000081060.1

Conserved Domains (1) summary

cd00032
Location:58 → 299

CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...