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KLF5 KLF transcription factor 5 [ Canis lupus familiaris (dog) ]

Gene ID: 612788, updated on 5-Mar-2024

Summary

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Official Symbol
KLF5provided by VGNC
Official Full Name
KLF transcription factor 5provided by VGNC
Primary source
VGNC:VGNC:42437
See related
Ensembl:ENSCAFG00845023297
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See KLF5 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 22 NC_051826.1 (27495564..27517646)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 22 NC_006604.4 (27019480..27041542)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 22 NC_049243.1 (27268194..27290288)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 22 NC_049282.1 (27157251..27179316)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 22 NC_049763.1 (27200989..27218613)

Chromosome 22 - NC_051826.1Genomic Context describing neighboring genes Neighboring gene mitotic spindle organizing protein 1 Neighboring gene BORA aurora kinase A activator Neighboring gene DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease Neighboring gene progesterone immunomodulatory binding factor 1 Neighboring gene 40S ribosomal protein S4-like Neighboring gene uncharacterized LOC111091649

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Krueppel-like factor 5; LOW QUALITY PROTEIN: Krueppel-like factor 5
Names
Kruppel like factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051826.1 Reference ROS_Cfam_1.0

    Range
    27495564..27517646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038431155.1 → XP_038287083.1  Krueppel-like factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LP66, A0A8C0LQA0, A0A8I3S6V9, A0A8P0N7V8
    Related
    ENSCAFP00845032227.1, ENSCAFT00845041122.1
    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  2. XM_038431154.1 → XP_038287082.1  Krueppel-like factor 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LPH2, A0A8C0LQA0, A0A8C0QBB0, A0A8I3PN28
    Related
    ENSCAFP00845032255.1, ENSCAFT00845041156.1
    Conserved Domains (5) summary
    COG5048
    Location:349 → 433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:378 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:433 → 455
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:419 → 444
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:3 → 370
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  3. XM_038431156.1 → XP_038287084.1  Krueppel-like factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LP66, A0A8C0LQA0, A0A8I3S6V9, A0A8P0N7V8
    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049282.1 Alternate UMICH_Zoey_3.1

    Range
    27157251..27179316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038506539.1 → XP_038362467.1  Krueppel-like factor 5 isoform X1

    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  2. XM_038506538.1 → XP_038362466.1  Krueppel-like factor 5 isoform X2

    Conserved Domains (5) summary
    COG5048
    Location:349 → 433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:378 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:433 → 455
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:419 → 444
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:3 → 370
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  3. XM_038506540.1 → XP_038362468.1  Krueppel-like factor 5 isoform X1

    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049763.1 Alternate UNSW_CanFamBas_1.0

    Range
    27200989..27218613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038633899.1 → XP_038489827.1  LOW QUALITY PROTEIN: Krueppel-like factor 5 isoform X2

    Conserved Domains (5) summary
    COG5048
    Location:349 → 433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:378 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:433 → 455
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:419 → 444
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:3 → 370
    KLF5_N; N-terminal domain of Kruppel-like factor 5

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049243.1 Alternate UU_Cfam_GSD_1.0

    Range
    27268194..27290288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038569732.1 → XP_038425660.1  Krueppel-like factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LP66, A0A8C0LQA0, A0A8I3S6V9, A0A8P0N7V8
    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  2. XM_038569731.1 → XP_038425659.1  Krueppel-like factor 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LPH2, A0A8C0LQA0, A0A8C0QBB0, A0A8I3PN28
    Conserved Domains (5) summary
    COG5048
    Location:349 → 433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:378 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:433 → 455
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:419 → 444
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:3 → 370
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  3. XM_038569733.1 → XP_038425661.1  Krueppel-like factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LP66, A0A8C0LQA0, A0A8I3S6V9, A0A8P0N7V8
    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006604.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    27019480..27041542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005633965.4 → XP_005634022.1  Krueppel-like factor 5 isoform X1

    See identical proteins and their annotated locations for XP_005634022.1

    UniProtKB/TrEMBL
    A0A8C0LP66, A0A8C0LQA0, A0A8I3S6V9, A0A8P0N7V8
    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  2. XM_843983.5 → XP_849076.2  Krueppel-like factor 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LPH2, A0A8C0LQA0, A0A8C0QBB0, A0A8I3PN28
    Conserved Domains (5) summary
    COG5048
    Location:349 → 433
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:378 → 397
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:433 → 455
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:419 → 444
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:3 → 370
    KLF5_N; N-terminal domain of Kruppel-like factor 5

  3. XM_005633966.3 → XP_005634023.1  Krueppel-like factor 5 isoform X1

    See identical proteins and their annotated locations for XP_005634023.1

    UniProtKB/TrEMBL
    A0A8C0LP66, A0A8C0LQA0, A0A8I3S6V9, A0A8P0N7V8
    Conserved Domains (5) summary
    COG5048
    Location:268 → 342
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:328 → 353
    zf-H2C2_2; Zinc-finger double domain
    cd21579
    Location:1 → 279
    KLF5_N; N-terminal domain of Kruppel-like factor 5
Nucleotide Protein
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