U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PAX5 paired box 5 [ Canis lupus familiaris (dog) ]

Gene ID: 612021, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
PAX5provided by VGNC
Official Full Name
paired box 5provided by VGNC
Primary source
VGNC:VGNC:44278
See related
Ensembl:ENSCAFG00845013298
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (54304295..54499334, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (51785891..51981004, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (53528788..53723946, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (52803918..52998984, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (52832452..53027560, complement)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111098092 Neighboring gene uncharacterized LOC119873944 Neighboring gene zinc finger CCHC-type containing 7 Neighboring gene U6 spliceosomal RNA Neighboring gene glyoxylate and hydroxypyruvate reductase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
paired box protein Pax-5
Names
paired box gene 5 (B-cell lineage specific activator)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    54304295..54499334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682165.1 → XP_038538093.1  paired box protein Pax-5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MFS5, A0A8I3NR84
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:298 → 408
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_038682167.1 → XP_038538095.1  paired box protein Pax-5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0MFS5, A0A8C0MG08, A0A8I3NE25, A0A8I3NR84
    Related
    ENSCAFP00845018662.1, ENSCAFT00845023777.1
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  3. XM_038682170.1 → XP_038538098.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  4. XM_038682168.1 → XP_038538096.1  paired box protein Pax-5 isoform X4

    UniProtKB/TrEMBL
    A0A8C0SUS3, A0A8I3P001, A0A8P0PGX2
    Related
    ENSCAFP00845018873.1, ENSCAFT00845024028.1
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:278 → 388
    Pax2_C; Paired-box protein 2 C terminal

  5. XM_038682166.1 → XP_038538094.1  paired box protein Pax-5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SUS3
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:297 → 407
    Pax2_C; Paired-box protein 2 C terminal

  6. XM_038682171.1 → XP_038538099.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  7. XM_038682169.1 → XP_038538097.1  paired box protein Pax-5 isoform X5

    UniProtKB/TrEMBL
    A0A8C0STI6, A0A8I3NR91
    Related
    ENSCAFP00845018956.1, ENSCAFT00845024135.1
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  8. XM_038682172.1 → XP_038538100.1  paired box protein Pax-5 isoform X7

    UniProtKB/TrEMBL
    A0A8C0SUX2, A0A8I3P028
    Related
    ENSCAFP00845018922.1, ENSCAFT00845024091.1
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    52803918..52998984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490709.1 → XP_038346637.1  paired box protein Pax-5 isoform X1

    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:298 → 408
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_038490711.1 → XP_038346639.1  paired box protein Pax-5 isoform X3

    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  3. XM_038490713.1 → XP_038346641.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  4. XM_038490710.1 → XP_038346638.1  paired box protein Pax-5 isoform X2

    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:297 → 407
    Pax2_C; Paired-box protein 2 C terminal

  5. XM_038490714.1 → XP_038346642.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  6. XM_038490712.1 → XP_038346640.1  paired box protein Pax-5 isoform X5

    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    52832452..53027560 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616696.1 → XP_038472624.1  paired box protein Pax-5 isoform X1

    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:298 → 408
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_038616698.1 → XP_038472626.1  paired box protein Pax-5 isoform X3

    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  3. XM_038616701.1 → XP_038472629.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  4. XM_038616699.1 → XP_038472627.1  paired box protein Pax-5 isoform X4

    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:278 → 388
    Pax2_C; Paired-box protein 2 C terminal

  5. XM_038616697.1 → XP_038472625.1  paired box protein Pax-5 isoform X2

    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:297 → 407
    Pax2_C; Paired-box protein 2 C terminal

  6. XM_038616702.1 → XP_038472630.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  7. XM_038616700.1 → XP_038472628.1  paired box protein Pax-5 isoform X5

    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  8. XM_038616703.1 → XP_038472631.1  paired box protein Pax-5 isoform X7

    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    53528788..53723946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552835.1 → XP_038408763.1  paired box protein Pax-5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MFS5, A0A8I3NR84
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:298 → 408
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_038552837.1 → XP_038408765.1  paired box protein Pax-5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0MFS5, A0A8C0MG08, A0A8I3NE25, A0A8I3NR84
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  3. XM_038552840.1 → XP_038408768.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  4. XM_038552838.1 → XP_038408766.1  paired box protein Pax-5 isoform X4

    UniProtKB/TrEMBL
    A0A8C0SUS3, A0A8I3P001, A0A8P0PGX2
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:278 → 388
    Pax2_C; Paired-box protein 2 C terminal

  5. XM_038552836.1 → XP_038408764.1  paired box protein Pax-5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SUS3
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:297 → 407
    Pax2_C; Paired-box protein 2 C terminal

  6. XM_038552841.1 → XP_038408769.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  7. XM_038552839.1 → XP_038408767.1  paired box protein Pax-5 isoform X5

    UniProtKB/TrEMBL
    A0A8C0STI6, A0A8I3NR91
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  8. XM_038552842.1 → XP_038408770.1  paired box protein Pax-5 isoform X7

    UniProtKB/TrEMBL
    A0A8C0SUX2, A0A8I3P028
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    51785891..51981004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022425611.2 → XP_022281319.1  paired box protein Pax-5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MFS5, A0A8I3NR84
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:298 → 408
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_849748.6 → XP_854841.2  paired box protein Pax-5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0MFS5, A0A8C0MG08, A0A8I3NE25, A0A8I3NR84
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  3. XM_022425613.2 → XP_022281321.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  4. XM_014117863.3 → XP_013973338.1  paired box protein Pax-5 isoform X4

    UniProtKB/TrEMBL
    A0A8C0SUS3, A0A8I3P001, A0A8P0PGX2
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:278 → 388
    Pax2_C; Paired-box protein 2 C terminal

  5. XM_005626823.4 → XP_005626880.2  paired box protein Pax-5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0SUS3
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:297 → 407
    Pax2_C; Paired-box protein 2 C terminal

  6. XM_038662355.1 → XP_038518283.1  paired box protein Pax-5 isoform X6

    Conserved Domains (2) summary
    pfam12403
    Location:190 → 300
    Pax2_C; Paired-box protein 2 C terminal
    cl21459
    Location:1 → 34
    HTH; Helix-turn-helix domains

  7. XM_022425612.2 → XP_022281320.1  paired box protein Pax-5 isoform X5

    UniProtKB/TrEMBL
    A0A8C0STI6, A0A8I3NR91
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain

  8. XM_022425614.2 → XP_022281322.1  paired box protein Pax-5 isoform X7

    UniProtKB/TrEMBL
    A0A8C0SUX2, A0A8I3P028
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.