MYOD1 myogenic differentiation 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: MYOD1provided by VGNC
Official Full Name: myogenic differentiation 1provided by VGNC
Primary source: VGNC:VGNC:43578
See related: Ensembl:ENSCAFG00845014938
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: MYOD
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	21	NC_051825.1 (41362253..41364156)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	21	NC_006603.4 (39757431..39759334)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	21	NC_049242.1 (40921445..40923349)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	21	NC_049281.1 (40375120..40377023)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	21	NC_049762.1 (40582881..40584784)

Chromosome 21 - NC_051825.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in muscle organ development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of myoblast differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: myoblast determination protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051825.1 Reference ROS_Cfam_1.0

Range

41362253..41364156

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038429609.1 → XP_038285537.1 myoblast determination protein 1

UniProtKB/TrEMBL

A0A8C0KWK8, A0A8C0TH61, A0A8I3NJT4

Related

ENSCAFP00845021049.1, ENSCAFT00845026712.1

Conserved Domains (3) summary

smart00520
Location:19 → 114

BASIC; Basic domain in HLH proteins of MYOD family

cd18936
Location:105 → 165

bHLH_TS_MYOD1_Myf3; basic helix-loop-helix (bHLH) domain found in myoblast determination protein 1 (MYOD1) and similar proteins

pfam12232
Location:191 → 259

Myf5; Myogenic determination factor 5

Alternate UMICH_Zoey_3.1

Genomic

NC_049281.1 Alternate UMICH_Zoey_3.1

Range

40375120..40377023

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038506186.1 → XP_038362114.1 myoblast determination protein 1

Conserved Domains (3) summary

smart00520
Location:19 → 114

BASIC; Basic domain in HLH proteins of MYOD family

cd18936
Location:105 → 165

bHLH_TS_MYOD1_Myf3; basic helix-loop-helix (bHLH) domain found in myoblast determination protein 1 (MYOD1) and similar proteins

pfam12232
Location:191 → 259

Myf5; Myogenic determination factor 5

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049762.1 Alternate UNSW_CanFamBas_1.0

Range

40582881..40584784

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038632290.1 → XP_038488218.1 myoblast determination protein 1

Conserved Domains (3) summary

smart00520
Location:19 → 114

BASIC; Basic domain in HLH proteins of MYOD family

cd18936
Location:105 → 165

bHLH_TS_MYOD1_Myf3; basic helix-loop-helix (bHLH) domain found in myoblast determination protein 1 (MYOD1) and similar proteins

pfam12232
Location:191 → 259

Myf5; Myogenic determination factor 5

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049242.1 Alternate UU_Cfam_GSD_1.0

Range

40921445..40923349

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038568190.1 → XP_038424118.1 myoblast determination protein 1

UniProtKB/TrEMBL

A0A8C0KWK8, A0A8C0TH61, A0A8I3NJT4

Conserved Domains (3) summary

smart00520
Location:19 → 114

BASIC; Basic domain in HLH proteins of MYOD family

cd18936
Location:105 → 165

bHLH_TS_MYOD1_Myf3; basic helix-loop-helix (bHLH) domain found in myoblast determination protein 1 (MYOD1) and similar proteins

pfam12232
Location:191 → 259

Myf5; Myogenic determination factor 5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

39757431..39759334

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_849663.4 → XP_854756.1 myoblast determination protein 1

UniProtKB/TrEMBL

A0A8C0KWK8, A0A8C0TH61, A0A8I3NJT4

Conserved Domains (3) summary

smart00520
Location:19 → 114

BASIC; Basic domain in HLH proteins of MYOD family

cd18936
Location:105 → 165

bHLH_TS_MYOD1_Myf3; basic helix-loop-helix (bHLH) domain found in myoblast determination protein 1 (MYOD1) and similar proteins

pfam12232
Location:191 → 259

Myf5; Myogenic determination factor 5