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POLR2E RNA polymerase II, I and III subunit E [ Canis lupus familiaris (dog) ]

Gene ID: 611859, updated on 5-Mar-2024

Summary

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Official Symbol
POLR2Eprovided by VGNC
Official Full Name
RNA polymerase II, I and III subunit Eprovided by VGNC
Primary source
VGNC:VGNC:44796
See related
Ensembl:ENSCAFG00845013457
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (58391944..58395762)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (57452042..57455856)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (58129830..58133647)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (57447255..57451066)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (57926783..57930597)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene strawberry notch homolog 2 Neighboring gene glutathione peroxidase 4 Neighboring gene Rho GTPase activating protein 45 Neighboring gene ATP binding cassette subfamily A member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC1
Names
RNA polymerase II subunit E
polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
XP_038285275.1
XP_038285276.1
XP_038311795.1
XP_038311797.1
XP_038360802.1
XP_038360803.1
XP_038423960.1
XP_038423961.1
XP_038488069.1
XP_038488070.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    58391944..58395762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038429348.1 → XP_038285276.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KUY1, A0A8C0NNS0, A0A8I3NR02
    Related
    ENSCAFP00845018834.1, ENSCAFT00845023984.1
    Conserved Domains (1) summary
    PLN03111
    Location:1 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional

  2. XM_038429347.1 → XP_038285275.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1

    Conserved Domains (1) summary
    cl29798
    Location:1 → 189
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    57447255..57451066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038504874.1 → XP_038360802.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X2

    Conserved Domains (1) summary
    PLN03111
    Location:1 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional

  2. XM_038504875.1 → XP_038360803.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1

    Conserved Domains (1) summary
    cl29798
    Location:1 → 189
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    57926783..57930597
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038632142.1 → XP_038488070.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X2

    Conserved Domains (1) summary
    PLN03111
    Location:1 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional

  2. XM_038632141.1 → XP_038488069.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1

    Conserved Domains (1) summary
    cl29798
    Location:1 → 189
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    58129830..58133647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038568033.1 → XP_038423961.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KUY1, A0A8C0NNS0, A0A8I3NR02
    Conserved Domains (1) summary
    PLN03111
    Location:1 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional

  2. XM_038568032.1 → XP_038423960.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1

    Conserved Domains (1) summary
    cl29798
    Location:1 → 189
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    57452042..57455856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038455869.1 → XP_038311797.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KUY1, A0A8C0NNS0, A0A8I3NR02
    Conserved Domains (1) summary
    PLN03111
    Location:1 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional

  2. XM_038455867.1 → XP_038311795.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1

    Conserved Domains (1) summary
    cl29798
    Location:1 → 189
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
Nucleotide Protein
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