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MMP20 matrix metallopeptidase 20 [ Canis lupus familiaris (dog) ]

Gene ID: 611829, updated on 5-Mar-2024

Summary

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Official Symbol
MMP20provided by VGNC
Official Full Name
matrix metallopeptidase 20provided by VGNC
Primary source
VGNC:VGNC:43281
See related
Ensembl:ENSCAFG00845000974
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See MMP20 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (29158125..29205612)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (29054854..29102065)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (29247616..29295291)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (29193037..29240434)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (29072357..29119832)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 8 Neighboring gene matrix metallopeptidase 27 Neighboring gene matrix metallopeptidase 7 Neighboring gene transmembrane protein 123

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amelogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-20
Names
matrix metallopeptidase 20 (enamelysin)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    29158125..29205612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038664271.1 → XP_038520199.1  matrix metalloproteinase-20

    UniProtKB/TrEMBL
    A0A8C0K784, A0A8C0TF13, A0A8I3RPK2
    Related
    ENSCAFP00845001315.1, ENSCAFT00845001665.1
    Conserved Domains (3) summary
    cd00094
    Location:293 → 483
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:116 → 271
    Peptidase_M10; Matrixin
    pfam01471
    Location:40 → 95
    PG_binding_1; Putative peptidoglycan binding domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    29193037..29240434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038477633.1 → XP_038333561.1  matrix metalloproteinase-20

    Conserved Domains (3) summary
    cd00094
    Location:293 → 483
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:116 → 271
    Peptidase_M10; Matrixin
    pfam01471
    Location:40 → 95
    PG_binding_1; Putative peptidoglycan binding domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    29072357..29119832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038599742.1 → XP_038455670.1  matrix metalloproteinase-20

    Conserved Domains (3) summary
    cd00094
    Location:293 → 483
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:116 → 271
    Peptidase_M10; Matrixin
    pfam01471
    Location:40 → 95
    PG_binding_1; Putative peptidoglycan binding domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    29247616..29295291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038535520.1 → XP_038391448.1  matrix metalloproteinase-20

    UniProtKB/TrEMBL
    A0A8C0K784, A0A8C0TF13, A0A8I3RPK2
    Conserved Domains (3) summary
    cd00094
    Location:293 → 483
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:116 → 271
    Peptidase_M10; Matrixin
    pfam01471
    Location:40 → 95
    PG_binding_1; Putative peptidoglycan binding domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    29054854..29102065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_849546.3 → XP_854639.1  matrix metalloproteinase-20

    See identical proteins and their annotated locations for XP_854639.1

    UniProtKB/TrEMBL
    A0A8C0K784, A0A8C0TF13, A0A8I3RPK2
    Conserved Domains (3) summary
    cd00094
    Location:293 → 483
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:116 → 271
    Peptidase_M10; Matrixin
    pfam01471
    Location:40 → 95
    PG_binding_1; Putative peptidoglycan binding domain
Nucleotide Protein
Heading Accession and Version

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