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CAPNS1 calpain small subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 611746, updated on 5-Mar-2024

Summary

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Official Symbol
CAPNS1provided by VGNC
Official Full Name
calpain small subunit 1provided by VGNC
Primary source
VGNC:VGNC:53676
See related
Ensembl:ENSCAFG00845000278
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (117151011..117160206, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (115955616..115964853, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (117393688..117402927, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (116720393..116729644, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (116340642..116349899, complement)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 146 Neighboring gene zinc finger protein 565 Neighboring gene cytochrome c oxidase subunit 7A1 Neighboring gene uncharacterized LOC119869614 Neighboring gene stress-induced-phosphoprotein 1 Neighboring gene putative deoxyribonuclease TATDN1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain small subunit 1; LOW QUALITY PROTEIN: calpain small subunit 1
XP_013971445.1
XP_022260090.1
XP_022260091.1
XP_038324363.1
XP_038324364.1
XP_038324365.1
XP_038324366.1
XP_038385138.1
XP_038385139.1
XP_038385140.1
XP_038385141.1
XP_038449400.1
XP_038449401.1
XP_038449402.1
XP_038449403.1
XP_038513247.1
XP_853634.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    117151011..117160206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038657319.1 → XP_038513247.1  LOW QUALITY PROTEIN: calpain small subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3MV04
    Related
    ENSCAFP00845000328.1, ENSCAFT00845000482.1
    Conserved Domains (1) summary
    cd16188
    Location:98 → 266
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    116720393..116729644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038468435.1 → XP_038324363.1  calpain small subunit 1 isoform X1

  2. XM_038468436.1 → XP_038324364.1  calpain small subunit 1 isoform X2

  3. XM_038468438.1 → XP_038324366.1  calpain small subunit 1 isoform X3

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

  4. XM_038468437.1 → XP_038324365.1  calpain small subunit 1 isoform X3

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    116340642..116349899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038593472.1 → XP_038449400.1  calpain small subunit 1 isoform X1

  2. XM_038593473.1 → XP_038449401.1  calpain small subunit 1 isoform X4

  3. XM_038593475.1 → XP_038449403.1  calpain small subunit 1 isoform X5

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

  4. XM_038593474.1 → XP_038449402.1  calpain small subunit 1 isoform X5

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    117393688..117402927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038529210.1 → XP_038385138.1  calpain small subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T3L1

  2. XM_038529211.1 → XP_038385139.1  calpain small subunit 1 isoform X6

  3. XM_038529213.1 → XP_038385141.1  calpain small subunit 1 isoform X7

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

  4. XM_038529212.1 → XP_038385140.1  calpain small subunit 1 isoform X7

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    115955616..115964853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_848541.6 → XP_853634.2  calpain small subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T3L1, A0A8P0NSM9
    Conserved Domains (1) summary
    cd16188
    Location:102 → 270
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

  2. XM_014115970.3 → XP_013971445.1  calpain small subunit 1 isoform X8

    Conserved Domains (1) summary
    cd16188
    Location:38 → 206
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

  3. XM_022404383.1 → XP_022260091.1  calpain small subunit 1 isoform X9

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

  4. XM_022404382.2 → XP_022260090.1  calpain small subunit 1 isoform X9

    Conserved Domains (1) summary
    cd16188
    Location:1 → 156
    EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2
Nucleotide Protein
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