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TAF12 TATA-box binding protein associated factor 12 [ Canis lupus familiaris (dog) ]

Gene ID: 609994, updated on 5-Mar-2024

Summary

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Gene symbol
TAF12
Gene description
TATA-box binding protein associated factor 12
See related
Ensembl:ENSCAFG00845009757
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (72424252..72457215)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (68442106..68475051)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (71258668..71291609)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (69252893..69285838)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (70260614..70293571)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene glucocorticoid modulatory element binding protein 1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene U11 spliceosomal RNA Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC111093260 Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene RAB42, member RAS oncogene family Neighboring gene uncharacterized LOC610012

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development and characterization of a normalized canine retinal cDNA library for genomic and expression studies. Zangerl B, et al. Invest Ophthalmol Vis Sci, 2006 Jun. PMID 16723480

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 12
Names
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001287043.1 → NP_001273972.1  transcription initiation factor TFIID subunit 12

    See identical proteins and their annotated locations for NP_001273972.1

    Status: VALIDATED

    Source sequence(s)
    CO585391, DN756363, DR105471, DT539079
    UniProtKB/TrEMBL
    A0A8C0L208, A0A8C0SN31, E2QVZ3, F6Y2Q3
    Related
    ENSCAFP00845013397.1, ENSCAFT00845017192.1
    Conserved Domains (1) summary
    cd07981
    Location:58 → 126
    TAF12; TATA Binding Protein (TBP) Associated Factor 12

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    72424252..72457215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038657869.1 → XP_038513797.1  transcription initiation factor TFIID subunit 12 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LHD8, A0A8C0RD02, A0A8I3N4M9, A0A8P0SSP3
    Conserved Domains (1) summary
    cd07981
    Location:110 → 178
    TAF12; TATA Binding Protein (TBP) Associated Factor 12

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    69252893..69285838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    70260614..70293571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    71258668..71291609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    68442106..68475051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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