NR2F6 nuclear receptor subfamily 2 group F member 6 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: NR2F6provided by VGNC
Official Full Name: nuclear receptor subfamily 2 group F member 6provided by VGNC
Primary source: VGNC:VGNC:43951
See related: Ensembl:ENSCAFG00845028696
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	20	NC_051824.1 (45976553..45986740)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	20	NC_006602.4 (45403706..45413888)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	20	NC_049241.1 (45898871..45909053)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	20	NC_049280.1 (45213189..45223360)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	20	NC_049761.1 (45623201..45633231)

Chromosome 20 - NC_051824.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nuclear receptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in anatomical structure development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nuclear receptor subfamily 2 group F member 6; LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group F member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051824.1 Reference ROS_Cfam_1.0

Range

45976553..45986740

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038428257.1 → XP_038284185.1 nuclear receptor subfamily 2 group F member 6

UniProtKB/TrEMBL

A0A8C0K8U5, A0A8C0NVY4, A0A8C0YZC3, A0A8I3QQ29

Related

ENSCAFP00845039753.1, ENSCAFT00845050711.1

Conserved Domains (2) summary

cd06948
Location:169 → 412

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:61 → 133

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

Alternate UMICH_Zoey_3.1

Genomic

NC_049280.1 Alternate UMICH_Zoey_3.1

Range

45213189..45223360

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038503902.1 → XP_038359830.1 nuclear receptor subfamily 2 group F member 6

Conserved Domains (2) summary

cd06948
Location:169 → 412

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:61 → 133

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049761.1 Alternate UNSW_CanFamBas_1.0

Range

45623201..45633231

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038631079.1 → XP_038487007.1 LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group F member 6

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049241.1 Alternate UU_Cfam_GSD_1.0

Range

45898871..45909053

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038566927.1 → XP_038422855.1 nuclear receptor subfamily 2 group F member 6

UniProtKB/TrEMBL

A0A8C0K8U5, A0A8C0NVY4, A0A8C0YZC3, A0A8I3QQ29

Conserved Domains (2) summary

cd06948
Location:169 → 412

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:61 → 133

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

45403706..45413888

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_847319.5 → XP_852412.1 nuclear receptor subfamily 2 group F member 6

UniProtKB/TrEMBL

A0A8C0K8U5, A0A8C0NVY4, A0A8C0YZC3, A0A8I3QQ29

Conserved Domains (2) summary

cd06948
Location:169 → 412

NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

cd06958
Location:61 → 133

NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers