NR6A1 nuclear receptor subfamily 6 group A member 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: NR6A1provided by VGNC
Official Full Name: nuclear receptor subfamily 6 group A member 1provided by VGNC
Primary source: VGNC:VGNC:49827
See related: Ensembl:ENSCAFG00845010445
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: Sf1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	9	NC_051813.1 (59147688..59369600)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	9	NC_006591.4 (57426017..57647543)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	9	NC_049230.1 (58313376..58535253)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	9	NC_049269.1 (57906617..58128464)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	9	NC_049750.1 (58222497..58444747)

Chromosome 9 - NC_051813.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

This study evaluated the expression of steroidogenic factor 1 (SF-1) in normal canine adrenal glands and adrenocortical adenomas and carcinomas.
Title: Expression of steroidogenic factor 1 in canine cortisol-secreting adrenocortical tumors and normal adrenals.

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Pathways from PubChem

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General gene information

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Markers

FTZF1-2 (e-PCR)
- UniSTS:254074

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: nuclear receptor subfamily 6 group A member 1

Names: steroidogenic factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051813.1 Reference ROS_Cfam_1.0

Range

59147688..59369600

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038678621.1 → XP_038534549.1 nuclear receptor subfamily 6 group A member 1

UniProtKB/TrEMBL

A0A8C0KUK4

Related

ENSCAFP00845014372.1, ENSCAFT00845018409.1

Conserved Domains (2) summary

cd06953
Location:253 → 464

NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4

cd07169
Location:50 → 139

NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

Alternate UMICH_Zoey_3.1

Genomic

NC_049269.1 Alternate UMICH_Zoey_3.1

Range

57906617..58128464

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038487452.1 → XP_038343380.1 nuclear receptor subfamily 6 group A member 1

Conserved Domains (2) summary

cd06953
Location:253 → 464

NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4

cd07169
Location:50 → 139

NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049750.1 Alternate UNSW_CanFamBas_1.0

Range

58222497..58444747

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038613329.1 → XP_038469257.1 nuclear receptor subfamily 6 group A member 1

Conserved Domains (2) summary

cd06953
Location:253 → 464

NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4

cd07169
Location:50 → 139

NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049230.1 Alternate UU_Cfam_GSD_1.0

Range

58313376..58535253

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038549389.1 → XP_038405317.1 nuclear receptor subfamily 6 group A member 1

UniProtKB/TrEMBL

A0A8C0KUK4

Conserved Domains (2) summary

cd06953
Location:253 → 464

NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4

cd07169
Location:50 → 139

NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

57426017..57647543

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038620149.1 → XP_038476077.1 nuclear receptor subfamily 6 group A member 1

UniProtKB/TrEMBL

A0A8C0KUK4

Conserved Domains (2) summary

cd06953
Location:253 → 464

NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4

cd07169
Location:50 → 139

NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers