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POLR3E RNA polymerase III subunit E [ Canis lupus familiaris (dog) ]

Gene ID: 608689, updated on 5-Mar-2024

Summary

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Official Symbol
POLR3Eprovided by VGNC
Official Full Name
RNA polymerase III subunit Eprovided by VGNC
Primary source
VGNC:VGNC:54059
See related
Ensembl:ENSCAFG00845002454
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (23467488..23497024, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (24824098..24853616, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (23561154..23590637, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (23269888..23299359, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (23176414..23205854, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102153375 Neighboring gene transmembrane protein 180 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene cerebellar degeneration related protein 2 Neighboring gene uncharacterized LOC119872181 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene eukaryotic elongation factor 2 kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC5; LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC5
Names
polymerase (RNA) III (DNA directed) polypeptide E (80kD)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    23467488..23497024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668874.1 → XP_038524802.1  DNA-directed RNA polymerase III subunit RPC5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 431
    Sin_N; Sin-like protein conserved region

  2. XM_038668871.1 → XP_038524799.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Related
    ENSCAFP00845003460.1, ENSCAFT00845004332.1
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  3. XM_038668875.1 → XP_038524803.1  DNA-directed RNA polymerase III subunit RPC5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NQV4, A0A8I3MPV0, A0A8P0PA42
    Conserved Domains (1) summary
    pfam04801
    Location:1 → 396
    Sin_N; Sin-like protein conserved region

  4. XM_038668872.1 → XP_038524800.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Related
    ENSCAFP00845003557.1, ENSCAFT00845004448.1
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  5. XM_038668873.1 → XP_038524801.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    23269888..23299359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038478824.1 → XP_038334752.1  LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC5 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    23176414..23205854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604154.1 → XP_038460082.1  DNA-directed RNA polymerase III subunit RPC5 isoform X2

    Conserved Domains (1) summary
    pfam04801
    Location:5 → 431
    Sin_N; Sin-like protein conserved region

  2. XM_038604151.1 → XP_038460079.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  3. XM_038604155.1 → XP_038460083.1  DNA-directed RNA polymerase III subunit RPC5 isoform X3

    Conserved Domains (1) summary
    pfam04801
    Location:1 → 396
    Sin_N; Sin-like protein conserved region

  4. XM_038604152.1 → XP_038460080.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  5. XM_038604153.1 → XP_038460081.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    23561154..23590637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540074.1 → XP_038396002.1  DNA-directed RNA polymerase III subunit RPC5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 431
    Sin_N; Sin-like protein conserved region

  2. XM_038540071.1 → XP_038395999.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  3. XM_038540075.1 → XP_038396003.1  DNA-directed RNA polymerase III subunit RPC5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NQV4, A0A8I3MPV0, A0A8P0PA42
    Conserved Domains (1) summary
    pfam04801
    Location:1 → 396
    Sin_N; Sin-like protein conserved region

  4. XM_038540072.1 → XP_038396000.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  5. XM_038540073.1 → XP_038396001.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24824098..24853616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038544941.1 → XP_038400869.1  DNA-directed RNA polymerase III subunit RPC5 isoform X2

    UniProtKB/TrEMBL
    A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 431
    Sin_N; Sin-like protein conserved region

  2. XM_038544917.1 → XP_038400845.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  3. XM_038544951.1 → XP_038400879.1  DNA-directed RNA polymerase III subunit RPC5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NQV4, A0A8I3MPV0, A0A8P0PA42
    Conserved Domains (1) summary
    pfam04801
    Location:1 → 396
    Sin_N; Sin-like protein conserved region

  4. XM_014114424.3 → XP_013969899.2  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region

  5. XM_038544933.1 → XP_038400861.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0L5T8, A0A8C0Q0D9
    Conserved Domains (1) summary
    pfam04801
    Location:5 → 432
    Sin_N; Sin-like protein conserved region
Nucleotide Protein
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