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SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [ Canis lupus familiaris (dog) ]

Gene ID: 608250, updated on 5-Mar-2024

Summary

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Official Symbol
SMARCE1provided by VGNC
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1provided by VGNC
Primary source
VGNC:VGNC:46540
See related
Ensembl:ENSCAFG00845007717
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (22808541..22829536)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (21488381..21509366)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (21966284..21987292)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (21582974..21603940)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (21841783..21862772)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene keratin 24 Neighboring gene keratin 222 Neighboring gene C-C motif chemokine receptor 7 Neighboring gene uncharacterized LOC111097354

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    22808541..22829536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038676549.1 → XP_038532477.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    UniProtKB/TrEMBL
    A0A8P0PDD3
    Related
    ENSCAFP00845010573.1, ENSCAFT00845013619.1
    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_038676550.1 → XP_038532478.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    UniProtKB/TrEMBL
    A0A8P0PDD3
    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    21582974..21603940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038485607.1 → XP_038341535.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_038485608.1 → XP_038341536.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    21841783..21862772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611357.1 → XP_038467285.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_038611358.1 → XP_038467286.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    21966284..21987292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038547374.1 → XP_038403302.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    UniProtKB/TrEMBL
    A0A8P0PDD3
    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_038547375.1 → XP_038403303.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    UniProtKB/TrEMBL
    A0A8P0PDD3
    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    21488381..21509366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_845917.5 → XP_851010.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    UniProtKB/TrEMBL
    A0A8P0PDD3
    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_022423003.2 → XP_022278711.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    UniProtKB/TrEMBL
    A0A8P0PDD3
    Conserved Domains (2) summary
    PTZ00121
    Location:250 → 372
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
Nucleotide Protein
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