FAF1 Fas associated factor 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: FAF1provided by VGNC
Official Full Name: Fas associated factor 1provided by VGNC
Primary source: VGNC:VGNC:40567
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 15

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	15	NC_051819.1 (10361829..10827913)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	15	NC_006597.4 (10381228..10841837)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	15	NC_049236.1 (10272462..10733482)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	15	NC_049275.1 (10167164..10628188)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	15	NC_049756.1 (10255573..10716512)

Chromosome 15 - NC_051819.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables NF-kappaB binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ubiquitin binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: FAS-associated factor 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051819.1 Reference ROS_Cfam_1.0

Range

10361829..10827913

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038687304.1 → XP_038543232.1 FAS-associated factor 1 isoform X1

UniProtKB/TrEMBL

A0A8C0KL48

Conserved Domains (6) summary

cd02990
Location:368 → 503

UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...

cd14413
Location:11 → 41

UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd01771
Location:587 → 665

UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins

cd17056
Location:236 → 284

Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd17129
Location:94 → 166

Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins

pfam09731
Location:506 → 614

Mitofilin; Mitochondrial inner membrane protein

Alternate UMICH_Zoey_3.1

Genomic

NC_049275.1 Alternate UMICH_Zoey_3.1

Range

10167164..10628188

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038495705.1 → XP_038351633.1 FAS-associated factor 1 isoform X2

Conserved Domains (6) summary

cd02990
Location:346 → 481

UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...

cd14413
Location:11 → 41

UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd01771
Location:565 → 643

UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins

cd17056
Location:189 → 262

Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd17129
Location:94 → 166

Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins

pfam09731
Location:484 → 592

Mitofilin; Mitochondrial inner membrane protein
XM_038495706.1 → XP_038351634.1 FAS-associated factor 1 isoform X3

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049756.1 Alternate UNSW_CanFamBas_1.0

Range

10255573..10716512

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038621946.1 → XP_038477874.1 FAS-associated factor 1 isoform X4

Conserved Domains (6) summary

cd02990
Location:346 → 481

UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...

cd14413
Location:11 → 41

UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd01771
Location:565 → 643

UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins

cd17056
Location:189 → 262

Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd17129
Location:94 → 166

Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins

pfam09731
Location:484 → 592

Mitofilin; Mitochondrial inner membrane protein
XM_038621947.1 → XP_038477875.1 FAS-associated factor 1 isoform X5

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049236.1 Alternate UU_Cfam_GSD_1.0

Range

10272462..10733482

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038558075.1 → XP_038414003.1 FAS-associated factor 1 isoform X6

UniProtKB/TrEMBL

A0A8C0KL48

Conserved Domains (6) summary

cd02990
Location:346 → 481

UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...

cd14413
Location:11 → 41

UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd01771
Location:565 → 643

UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins

cd17056
Location:189 → 262

Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd17129
Location:94 → 166

Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins

pfam09731
Location:484 → 592

Mitofilin; Mitochondrial inner membrane protein
XM_038558076.1 → XP_038414004.1 FAS-associated factor 1 isoform X7

UniProtKB/TrEMBL

A0A8C0KL48, A0A8C0MM58, A0A8P0NR35

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

10381228..10841837

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038452059.1 → XP_038307987.1 FAS-associated factor 1 isoform X8

UniProtKB/TrEMBL

A0A8C0KL48

Conserved Domains (6) summary

cd02990
Location:346 → 481

UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...

cd14413
Location:11 → 41

UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd01771
Location:565 → 643

UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins

cd17056
Location:189 → 262

Ubl_FAF1; ubiquitin-like (Ubl) domain found in FAS-associated factor 1 (FAF1) and similar proteins

cd17129
Location:94 → 166

Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins

pfam09731
Location:484 → 592

Mitofilin; Mitochondrial inner membrane protein
XM_844729.6 → XP_849822.1 FAS-associated factor 1 isoform X9

UniProtKB/TrEMBL

A0A8C0KL48, A0A8C0MM58, A0A8P0NR35

Conserved Domains (4) summary

cd01771
Location:569 → 648

Faf1_UBX; Faf1 UBX domain

cd02990
Location:351 → 486

UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...

cd14413
Location:14 → 46

UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins

pfam09731
Location:489 → 594

Mitofilin; Mitochondrial inner membrane protein