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CAPN9 calpain 9 [ Canis lupus familiaris (dog) ]

Gene ID: 608044, updated on 5-Mar-2024

Summary

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Official Symbol
CAPN9provided by VGNC
Official Full Name
calpain 9provided by VGNC
Primary source
VGNC:VGNC:38708
See related
Ensembl:ENSCAFG00845000946
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (8637647..8677873, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (8604905..8645249, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (8993883..9034136, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (8641831..8682029, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (8763717..8803940, complement)

Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene chromosome 4 C1orf198 homolog Neighboring gene uncharacterized LOC119871445 Neighboring gene angiotensinogen Neighboring gene microRNA mir-1841 Neighboring gene component of oligomeric golgi complex 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-9; LOW QUALITY PROTEIN: calpain-9
XP_038328841.1
XP_038389863.1
XP_038454183.1
XP_038518488.1
XP_850025.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051808.1 Reference ROS_Cfam_1.0

    Range
    8637647..8677873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038662560.1 → XP_038518488.1  calpain-9

    UniProtKB/TrEMBL
    A0A8C0NDL3, A0A8C0PZ26, A0A8I3MDF9
    Related
    ENSCAFP00845001334.1, ENSCAFT00845001689.1
    Conserved Domains (4) summary
    cd00214
    Location:347 → 496
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:522 → 550
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:522 → 692
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:43 → 335
    Peptidase_C2; Calpain family cysteine protease

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049264.1 Alternate UMICH_Zoey_3.1

    Range
    8641831..8682029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038472913.1 → XP_038328841.1  LOW QUALITY PROTEIN: calpain-9

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

    Range
    8763717..8803940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038598255.1 → XP_038454183.1  calpain-9

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

    Range
    8993883..9034136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038533935.1 → XP_038389863.1  calpain-9

    UniProtKB/TrEMBL
    A0A8C0NDL3, A0A8C0PZ26, A0A8I3MDF9
    Conserved Domains (4) summary
    cd00214
    Location:347 → 496
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:522 → 550
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:522 → 692
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:43 → 335
    Peptidase_C2; Calpain family cysteine protease

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    8604905..8645249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_844932.6 → XP_850025.2  calpain-9

    UniProtKB/TrEMBL
    A0A8C0NDL3, A0A8C0PZ26, A0A8I3MDF9
    Conserved Domains (4) summary
    cd00214
    Location:347 → 496
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:522 → 550
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:522 → 692
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:43 → 335
    Peptidase_C2; Calpain family cysteine protease
Nucleotide Protein
Heading Accession and Version

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