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PSMC3IP PSMC3 interacting protein [ Canis lupus familiaris (dog) ]

Gene ID: 607659, updated on 5-Mar-2024

Summary

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Official Symbol
PSMC3IPprovided by VGNC
Official Full Name
PSMC3 interacting proteinprovided by VGNC
Primary source
VGNC:VGNC:45103
See related
Ensembl:ENSCAFG00845008560
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (21105591..21110259)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (19848489..19853157)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (20260704..20265373)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (19891441..19896094)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (20156657..20161330)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene tubulin, gamma 1 Neighboring gene reticulophagy regulator family member 3 Neighboring gene MAX dimerization protein MLX Neighboring gene Coenzyme A synthase Neighboring gene hydroxysteroid 17-beta dehydrogenase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables recombinase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homologous chromosome pairing at meiosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic joint molecule formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic strand invasion involved in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA recombinase auxiliary factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homologous-pairing protein 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    21105591..21110259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038676428.1 → XP_038532356.1  homologous-pairing protein 2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0LTD7
    Conserved Domains (2) summary
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 192
    LZ3wCH; Leucine zipper with capping helix domain

  2. XM_038676429.1 → XP_038532357.1  homologous-pairing protein 2 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C0LTD7
    Conserved Domains (2) summary
    TIGR02169
    Location:78 → 172
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

  3. XM_038676427.1 → XP_038532355.1  homologous-pairing protein 2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0LTD7, A0A8C0R0K7, A0A8I3NBI2, A0A8P0NGH0
    Related
    ENSCAFP00845011702.1, ENSCAFT00845015079.1
    Conserved Domains (3) summary
    TIGR02169
    Location:78 → 208
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 210
    LZ3wCH; Leucine zipper with capping helix domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    19891441..19896094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038485508.1 → XP_038341436.1  homologous-pairing protein 2 homolog isoform X4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    20156657..20161330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611242.1 → XP_038467170.1  homologous-pairing protein 2 homolog isoform X3

    Conserved Domains (2) summary
    TIGR02169
    Location:78 → 172
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

  2. XM_038611240.1 → XP_038467168.1  homologous-pairing protein 2 homolog isoform X2

    Conserved Domains (2) summary
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 192
    LZ3wCH; Leucine zipper with capping helix domain

  3. XM_038611239.1 → XP_038467167.1  homologous-pairing protein 2 homolog isoform X1

    Conserved Domains (3) summary
    TIGR02169
    Location:78 → 208
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 210
    LZ3wCH; Leucine zipper with capping helix domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    20260704..20265373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038547271.1 → XP_038403199.1  homologous-pairing protein 2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0LTD7
    Conserved Domains (2) summary
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 192
    LZ3wCH; Leucine zipper with capping helix domain

  2. XM_038547272.1 → XP_038403200.1  homologous-pairing protein 2 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C0LTD7
    Conserved Domains (2) summary
    TIGR02169
    Location:78 → 172
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

  3. XM_038547270.1 → XP_038403198.1  homologous-pairing protein 2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0LTD7, A0A8C0R0K7, A0A8I3NBI2, A0A8P0NGH0
    Conserved Domains (3) summary
    TIGR02169
    Location:78 → 208
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 210
    LZ3wCH; Leucine zipper with capping helix domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    19848489..19853157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038602584.1 → XP_038458512.1  homologous-pairing protein 2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0LTD7
    Conserved Domains (2) summary
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 192
    LZ3wCH; Leucine zipper with capping helix domain

  2. XM_022422977.2 → XP_022278685.1  homologous-pairing protein 2 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8C0LTD7
    Conserved Domains (2) summary
    TIGR02169
    Location:78 → 172
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

  3. XM_003435226.5 → XP_003435274.1  homologous-pairing protein 2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8C0LTD7, A0A8C0R0K7, A0A8I3NBI2, A0A8P0NGH0
    Conserved Domains (3) summary
    TIGR02169
    Location:78 → 208
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam07106
    Location:12 → 74
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:154 → 210
    LZ3wCH; Leucine zipper with capping helix domain
Nucleotide Protein
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