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ETV5 ETS variant transcription factor 5 [ Canis lupus familiaris (dog) ]

Gene ID: 607474, updated on 5-Mar-2024

Summary

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Official Symbol
ETV5provided by VGNC
Official Full Name
ETS variant transcription factor 5provided by VGNC
Primary source
VGNC:VGNC:40499
See related
Ensembl:ENSCAFG00845019348
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 34
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 34 NC_051838.1 (18640268..18702295, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 34 NC_006616.4 (22815410..22877423, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 34 NC_049255.1 (18900890..18960409, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 34 NC_049294.1 (18666771..18729017, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 34 NC_049775.1 (18671525..18733556, complement)

Chromosome 34 - NC_051838.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S3a-like Neighboring gene transformer 2 beta homolog Neighboring gene U6 spliceosomal RNA Neighboring gene diacylglycerol kinase gamma Neighboring gene uncharacterized LOC106558211 Neighboring gene uncharacterized LOC111093949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ETS translocation variant 5; LOW QUALITY PROTEIN: ETS translocation variant 5
Names
ets variant gene 5 (ets-related molecule)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051838.1 Reference ROS_Cfam_1.0

    Range
    18640268..18702295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445812.1 → XP_038301740.1  ETS translocation variant 5

    UniProtKB/TrEMBL
    A0A8C0JVI3, A0A8C0RQH1, A0A8I3S114, A0A8P0SI32
    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  2. XM_038445811.1 → XP_038301739.1  ETS translocation variant 5

    UniProtKB/TrEMBL
    A0A8C0JVI3, A0A8C0RQH1, A0A8I3S114, A0A8P0SI32
    Related
    ENSCAFP00845026722.1, ENSCAFT00845034135.1
    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049294.1 Alternate UMICH_Zoey_3.1

    Range
    18666771..18729017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520007.1 → XP_038375935.1  ETS translocation variant 5

    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  2. XM_038520005.1 → XP_038375933.1  ETS translocation variant 5

    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049775.1 Alternate UNSW_CanFamBas_1.0

    Range
    18671525..18733556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038648048.1 → XP_038503976.1  ETS translocation variant 5

    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  2. XM_038648047.1 → XP_038503975.1  ETS translocation variant 5

    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049255.1 Alternate UU_Cfam_GSD_1.0

    Range
    18900890..18960409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038583633.1 → XP_038439561.1  LOW QUALITY PROTEIN: ETS translocation variant 5

    UniProtKB/TrEMBL
    A0A8C0JVI3, A0A8C0RQH1, A0A8I3S114, A0A8P0SI32
    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006616.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22815410..22877423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022414125.2 → XP_022269833.1  ETS translocation variant 5

    UniProtKB/TrEMBL
    A0A8C0JVI3, A0A8C0RQH1, A0A8I3S114, A0A8P0SI32
    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  2. XM_005639799.4 → XP_005639856.1  ETS translocation variant 5

    See identical proteins and their annotated locations for XP_005639856.1

    UniProtKB/TrEMBL
    A0A8C0JVI3, A0A8C0RQH1, A0A8I3S114, A0A8P0SI32
    Conserved Domains (2) summary
    smart00413
    Location:367 → 452
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:2 → 366
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
Nucleotide Protein
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