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LOC607096 integrin alpha-D-like [ Canis lupus familiaris (dog) ]

Gene ID: 607096, updated on 22-Jan-2024

Summary

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Gene symbol
LOC607096
Gene description
integrin alpha-D-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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Location:
chromosome: 6
Exon count:
30
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (16985424..17011496, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (18463618..18480963)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (17019621..17045674, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (16788550..16814600, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (16707725..16733766, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 5 Neighboring gene cytochrome c oxidase subunit 6A2 Neighboring gene integrin subunit alpha D Neighboring gene integrin subunit alpha X Neighboring gene integrin subunit alpha M Neighboring gene ubiquitin-conjugating enzyme E2 C-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    16985424..17011496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668534.1 → XP_038524462.1  integrin alpha-D-like isoform X2

    UniProtKB/TrEMBL
    A0A8C0L7U4
    Conserved Domains (4) summary
    smart00191
    Location:539 → 594
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00357
    Location:1146 → 1160
    Integrin_alpha; Integrin alpha cytoplasmic region
    pfam08441
    Location:637 → 979
    Integrin_alpha2; Integrin alpha
    cl00057
    Location:154 → 347
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_038668535.1 → XP_038524463.1  integrin alpha-D-like isoform X3

    UniProtKB/TrEMBL
    A0A8C0L7U4
    Conserved Domains (4) summary
    smart00191
    Location:521 → 576
    Int_alpha; Integrin alpha (beta-propellor repeats)
    cd01469
    Location:154 → 329
    vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
    pfam00357
    Location:1128 → 1142
    Integrin_alpha; Integrin alpha cytoplasmic region
    pfam08441
    Location:619 → 961
    Integrin_alpha2; Integrin alpha

  3. XM_038668533.1 → XP_038524461.1  integrin alpha-D-like isoform X1

    UniProtKB/TrEMBL
    A0A8C0L7U4
    Conserved Domains (4) summary
    smart00191
    Location:553 → 608
    Int_alpha; Integrin alpha (beta-propellor repeats)
    cd01469
    Location:154 → 361
    vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
    pfam00357
    Location:1160 → 1174
    Integrin_alpha; Integrin alpha cytoplasmic region
    pfam08441
    Location:651 → 993
    Integrin_alpha2; Integrin alpha

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    16788550..16814600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038478476.1 → XP_038334404.1  integrin alpha-D-like isoform X4

  2. XM_038478475.1 → XP_038334403.1  integrin alpha-D-like isoform X3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    16707725..16733766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038603816.1 → XP_038459744.1  integrin alpha-D-like isoform X2

  2. XM_038603817.1 → XP_038459745.1  integrin alpha-D-like isoform X3

  3. XM_038603815.1 → XP_038459743.1  integrin alpha-D-like isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    17019621..17045674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539731.1 → XP_038395659.1  integrin alpha-D-like isoform X2

    UniProtKB/TrEMBL
    A0A8C0L7U4

  2. XM_038539732.1 → XP_038395660.1  integrin alpha-D-like isoform X3

    UniProtKB/TrEMBL
    A0A8C0L7U4

  3. XM_038539730.1 → XP_038395658.1  integrin alpha-D-like isoform X1

    UniProtKB/TrEMBL
    A0A8C0L7U4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    18463618..18480963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038558421.1 → XP_038414349.1  integrin alpha-D-like isoform X5

    UniProtKB/TrEMBL
    A0A8P0NG02
    Conserved Domains (3) summary
    smart00191
    Location:508 → 563
    Int_alpha; Integrin alpha (beta-propellor repeats)
    cd01469
    Location:142 → 317
    vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
    pfam08441
    Location:606 → 912
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
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