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Erbb4 erb-b2 receptor tyrosine kinase 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 59323, updated on 13-Apr-2024

Summary

Official Symbol
Erbb4provided by RGD
Official Full Name
erb-b2 receptor tyrosine kinase 4provided by RGD
Primary source
RGD:620486
See related
Ensembl:ENSRNOG00000014248 AllianceGenome:RGD:620486
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable several functions, including epidermal growth factor receptor binding activity; protein homodimerization activity; and transmembrane receptor protein tyrosine kinase activity. Involved in several processes, including animal organ development; positive regulation of GABAergic synaptic transmission; and positive regulation of glucose import. Located in several cellular components, including caveola; postsynaptic density; and postsynaptic membrane. Colocalizes with inhibitory synapse. Used to study visual epilepsy. Biomarker of congestive heart failure; median neuropathy; radiculopathy; and schizophrenia. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 19; colorectal cancer; esophagus squamous cell carcinoma; hepatocellular carcinoma; and lung adenocarcinoma. Orthologous to human ERBB4 (erb-b2 receptor tyrosine kinase 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 139.1), Kidney (RPKM 128.9) and 5 other tissues See more
Orthologs
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Genomic context

Location:
9q32-q33
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (76973386..78045633, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (69523733..70596743, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (75021790..76178936, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134480291 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene uncharacterized LOC120094804 Neighboring gene uncharacterized LOC134480383 Neighboring gene 40S ribosomal protein S10 pseudogene Neighboring gene uncharacterized LOC120094697 Neighboring gene PC-esterase domain containing 1B like 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables GABA receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables GABA receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables epidermal growth factor receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables epidermal growth factor receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables epidermal growth factor receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables epidermal growth factor receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables epidermal growth factor receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables neuregulin receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables neuregulin receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables neuregulin receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables protein tyrosine kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 
enables transcription cis-regulatory region binding ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane receptor protein tyrosine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transmembrane receptor protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables transmembrane receptor protein tyrosine kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane receptor protein tyrosine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in ERBB signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in ERBB2-ERBB4 signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in ERBB2-ERBB4 signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in ERBB4 signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
involved_in ERBB4 signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in ERBB4-ERBB4 signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in ERBB4-ERBB4 signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle tissue regeneration IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac muscle tissue regeneration ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle tissue regeneration ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell fate commitment ISO
Inferred from Sequence Orthology
more info
 
involved_in cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in cell migration ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell surface receptor protein tyrosine kinase signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in cell surface receptor protein tyrosine kinase signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cell surface receptor protein tyrosine kinase signaling pathway TAS
Traceable Author Statement
more info
PubMed 
involved_in cell surface receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in cell surface receptor signaling pathway via JAK-STAT IEA
Inferred from Electronic Annotation
more info
 
involved_in cell surface receptor signaling pathway via JAK-STAT ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to epidermal growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cellular response to epidermal growth factor stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in central nervous system morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in central nervous system morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in central nervous system morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in embryonic pattern specification IEA
Inferred from Electronic Annotation
more info
 
involved_in embryonic pattern specification ISO
Inferred from Sequence Orthology
more info
 
involved_in embryonic pattern specification ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in establishment of planar polarity involved in nephron morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within establishment of planar polarity involved in nephron morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within heart development ISO
Inferred from Sequence Orthology
more info
 
involved_in heart development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in lactation IEA
Inferred from Electronic Annotation
more info
 
involved_in lactation ISO
Inferred from Sequence Orthology
more info
 
involved_in lactation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in mammary gland alveolus development IEA
Inferred from Electronic Annotation
more info
 
involved_in mammary gland alveolus development ISO
Inferred from Sequence Orthology
more info
 
involved_in mammary gland alveolus development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in mammary gland development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in mammary gland epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in mammary gland epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in mammary gland epithelial cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in mitochondrial fragmentation involved in apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in mitochondrial fragmentation involved in apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in mitochondrial fragmentation involved in apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in multicellular organism development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of muscle cell apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of neuron migration ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within nervous system development ISO
Inferred from Sequence Orthology
more info
 
involved_in nervous system development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 
involved_in neural crest cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in neural crest cell migration ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in neurogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in neurotransmitter receptor localization to postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
 
involved_in neurotransmitter receptor localization to postsynaptic specialization membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in olfactory bulb interneuron differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in olfactory bulb interneuron differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in olfactory bulb interneuron differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cardiac muscle cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cardiac muscle cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cardiac muscle cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell population proliferation IBA
Inferred from Biological aspect of Ancestor
more info
 
NOT acts_upstream_of_or_within positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of epithelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of glucose import IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of phospholipid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of protein localization to cell surface IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of protein localization to cell surface ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of receptor signaling pathway via JAK-STAT IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of receptor signaling pathway via JAK-STAT ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of receptor signaling pathway via JAK-STAT ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of synaptic transmission, GABAergic IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of tyrosine phosphorylation of STAT protein IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of tyrosine phosphorylation of STAT protein ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of tyrosine phosphorylation of STAT protein ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of cell communication IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cell migration ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of signaling IEA
Inferred from Electronic Annotation
more info
 
involved_in response to hydrogen peroxide IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to progesterone IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to xenobiotic stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in surfactant homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in synapse assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in synapse maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in telencephalon development IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in GABA-ergic synapse IEA
Inferred from Electronic Annotation
more info
 
is_active_in GABA-ergic synapse ISO
Inferred from Sequence Orthology
more info
 
is_active_in basal plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in basolateral plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in caveola IDA
Inferred from Direct Assay
more info
PubMed 
located_in dendrite IDA
Inferred from Direct Assay
more info
PubMed 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
is_active_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in inhibitory synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 
is_active_in neuromuscular junction ISO
Inferred from Sequence Orthology
more info
 
located_in neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane TAS
Traceable Author Statement
more info
 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in postsynaptic density membrane ISO
Inferred from Sequence Orthology
more info
 
located_in postsynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in presynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in presynaptic membrane ISO
Inferred from Sequence Orthology
more info
 
part_of receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 
part_of receptor complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
receptor tyrosine-protein kinase erbB-4
Names
c-erbB-4
proto-oncogene-like protein c-ErbB-4
receptor tyrosine kinase
v-erb-a erythroblastic leukemia viral oncogene homolog 4
v-erb-b2 avian erythroblastic leukemia viral oncogene 4
NP_067719.2
XP_038940077.1
XP_038940078.1
XP_038940079.1
XP_063123732.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021687.2NP_067719.2  receptor tyrosine-protein kinase erbB-4 precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/Swiss-Prot
    Q62956, Q6UA28, Q6UA29, Q9Z2N7
    UniProtKB/TrEMBL
    A0A8I6AIL0, A6KFE7
    Related
    ENSRNOP00000092891.1, ENSRNOT00000118754.1
    Conserved Domains (5) summary
    cd05110
    Location:7101012
    PTKc_HER4; Catalytic domain of the Protein Tyrosine Kinase, HER4
    cd12092
    Location:642685
    TM_ErbB4; Transmembrane domain of ErbB4, a Protein Tyrosine Kinase
    pfam00757
    Location:186332
    Furin-like; Furin-like cysteine rich region
    pfam01030
    Location:55167
    Recep_L_domain; Receptor L domain
    pfam14843
    Location:502634
    GF_recep_IV; Growth factor receptor domain IV

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    76973386..78045633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063267662.1XP_063123732.1  receptor tyrosine-protein kinase erbB-4 isoform X3

  2. XM_039084150.2XP_038940078.1  receptor tyrosine-protein kinase erbB-4 isoform X2

    UniProtKB/Swiss-Prot
    Q62956, Q6UA28, Q6UA29, Q9Z2N7
    UniProtKB/TrEMBL
    A0A8I6GMJ5
    Related
    ENSRNOP00000097510.1
    Conserved Domains (5) summary
    cd05110
    Location:7101012
    PTKc_HER4; Catalytic domain of the Protein Tyrosine Kinase, HER4
    cd12092
    Location:642685
    TM_ErbB4; Transmembrane domain of ErbB4, a Protein Tyrosine Kinase
    pfam00757
    Location:186332
    Furin-like; Furin-like cysteine rich region
    pfam01030
    Location:55167
    Recep_L_domain; Receptor L domain
    pfam14843
    Location:502634
    GF_recep_IV; Growth factor receptor domain IV
  3. XM_039084151.2XP_038940079.1  receptor tyrosine-protein kinase erbB-4 isoform X4

    UniProtKB/Swiss-Prot
    Q62956, Q6UA28, Q6UA29, Q9Z2N7
    Conserved Domains (5) summary
    cd05110
    Location:7001002
    PTKc_HER4; Catalytic domain of the Protein Tyrosine Kinase, HER4
    cd12092
    Location:632675
    TM_ErbB4; Transmembrane domain of ErbB4, a Protein Tyrosine Kinase
    pfam00757
    Location:186332
    Furin-like; Furin-like cysteine rich region
    pfam01030
    Location:55167
    Recep_L_domain; Receptor L domain
    pfam14843
    Location:502634
    GF_recep_IV; Growth factor receptor domain IV
  4. XM_039084149.2XP_038940077.1  receptor tyrosine-protein kinase erbB-4 isoform X1

    UniProtKB/Swiss-Prot
    Q62956, Q6UA28, Q6UA29, Q9Z2N7
    UniProtKB/TrEMBL
    A0A8I6AGX1
    Related
    ENSRNOP00000092095.1
    Conserved Domains (5) summary
    cd05110
    Location:7001002
    PTKc_HER4; Catalytic domain of the Protein Tyrosine Kinase, HER4
    cd12092
    Location:632675
    TM_ErbB4; Transmembrane domain of ErbB4, a Protein Tyrosine Kinase
    pfam00757
    Location:186332
    Furin-like; Furin-like cysteine rich region
    pfam01030
    Location:55167
    Recep_L_domain; Receptor L domain
    pfam14843
    Location:502634
    GF_recep_IV; Growth factor receptor domain IV