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gtf2e1 general transcription factor IIE, polypeptide 1, alpha [ Danio rerio (zebrafish) ]

Gene ID: 567899, updated on 27-Mar-2024

Summary

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Official Symbol
gtf2e1provided by ZNC
Official Full Name
general transcription factor IIE, polypeptide 1, alphaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-221
See related
Ensembl:ENSDARG00000000542 AllianceGenome:ZFIN:ZDB-GENE-041210-221
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-194d6.2
Summary
Predicted to be involved in transcription open complex formation at RNA polymerase II promoter. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIIE complex. Orthologous to human GTF2E1 (general transcription factor IIE subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (27691589..27720087, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (27880839..27909327, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene protein O-glucosyltransferase 2 Neighboring gene syntaxin binding protein 5L Neighboring gene leucine carboxyl methyltransferase 2 Neighboring gene crystallin, gamma S2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
involved_in transcription open complex formation at RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
general transcription factor IIE subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045145.1 → NP_001038610.1  general transcription factor IIE subunit 1

    See identical proteins and their annotated locations for NP_001038610.1

    Status: PROVISIONAL

    Source sequence(s)
    AL772198
    UniProtKB/TrEMBL
    A0A8N1TQ27, Q5SQE1
    Related
    ENSDARP00000135822.1, ENSDART00000161068.2
    Conserved Domains (4) summary
    smart00531
    Location:28 → 175
    TFIIE; Transcription initiation factor IIE
    pfam02002
    Location:16 → 123
    TFIIE_alpha; TFIIE alpha subunit
    pfam08271
    Location:127 → 174
    TF_Zn_Ribbon; TFIIB zinc-binding
    pfam11521
    Location:402 → 446
    TFIIE-A_C; C-terminal general transcription factor TFIIE alpha

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    27691589..27720087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167734.4 → XP_005167791.1  general transcription factor IIE subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_005167791.1

    UniProtKB/TrEMBL
    A0A8N1TQ27, Q5SQE1
    Related
    ENSDARP00000001151.7, ENSDART00000000566.10
    Conserved Domains (4) summary
    smart00531
    Location:28 → 175
    TFIIE; Transcription initiation factor IIE
    pfam02002
    Location:16 → 123
    TFIIE_alpha; TFIIE alpha subunit
    pfam08271
    Location:127 → 174
    TF_Zn_Ribbon; TFIIB zinc-binding
    pfam11521
    Location:402 → 446
    TFIIE-A_C; C-terminal general transcription factor TFIIE alpha

  2. XM_017357708.2 → XP_017213197.1  general transcription factor IIE subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A8N1TQ27, Q5SQE1
    Related
    ENSDARP00000119282.1, ENSDART00000138386.2
    Conserved Domains (4) summary
    smart00531
    Location:28 → 175
    TFIIE; Transcription initiation factor IIE
    pfam02002
    Location:16 → 123
    TFIIE_alpha; TFIIE alpha subunit
    pfam08271
    Location:127 → 174
    TF_Zn_Ribbon; TFIIB zinc-binding
    pfam11521
    Location:402 → 446
    TFIIE-A_C; C-terminal general transcription factor TFIIE alpha

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395282.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    360464..388779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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