ppp2r5b protein phosphatase 2, regulatory subunit B', beta [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ppp2r5bprovided by ZNC
Official Full Name: protein phosphatase 2, regulatory subunit B', betaprovided by ZNC
Primary source: ZFIN:ZDB-GENE-101208-1
See related: Ensembl:ENSDARG00000054931 AllianceGenome:ZFIN:ZDB-GENE-101208-1
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable protein phosphatase regulator activity. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Orthologous to human PPP2R5B (protein phosphatase 2 regulatory subunit B'beta). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (25058446..25100310)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (24787291..24829149)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein phosphatase regulator activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within signal transduction	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of protein phosphatase type 2A complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

25058446..25100310

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021477803.1 → XP_021333478.1 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform

UniProtKB/TrEMBL

A0A8M9Q2D1, F1Q9Y3

Related

ENSDARP00000071683.4, ENSDART00000077215.6

Conserved Domains (1) summary

pfam01603
Location:66 → 466

B56; Protein phosphatase 2A regulatory B subunit (B56 family)

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394690.1 Reference GRCz11 ALT_DRER_TU_1

Range

31627..72704

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_685678.6 → XP_690770.3 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform

UniProtKB/TrEMBL

A0A8N7T601

Conserved Domains (1) summary

pfam01603
Location:66 → 466

B56; Protein phosphatase 2A regulatory B subunit (B56 family)