selenoo1 selenoprotein O1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: selenoo1provided by ZNC
Official Full Name: selenoprotein O1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-4485
See related: Ensembl:ENSDARG00000041951 AllianceGenome:ZFIN:ZDB-GENE-030131-4485
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: selo; fd10b07; selenoo; wu:fd10b07; si:ch211-15i6.2
Summary: This gene encodes a selenoprotein containing the rare amino acid, selenocysteine (Sec). Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs in vertebrates contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. The The exact function of this selenoprotein is not known, but it is thought to have redox activity. A paralog of this gene is found on chromosome 4 (GeneID:558542). [provided by RefSeq, Aug 2017]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (14863407..14879330, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (14894895..14910623, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fd10b07.x1 (e-PCR)
- UniSTS:195096

fb70e07.y1 (e-PCR)
- UniSTS:191027

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables AMPylase activity	IEA Inferred from Electronic Annotation more info
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables nucleotidyltransferase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: selenoprotein O1

Names: protein adenylyltransferase SelO-1, mitochondrial; selenoprotein O

NP_001038336.2

EC 2.7.7.108

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.