zmp:0000001082 zmp:0000001082 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zmp:0000001082provided by ZNC
Official Full Name: zmp:0000001082provided by ZNC
Primary source: ZFIN:ZDB-GENE-140106-42
See related: Ensembl:ENSDARG00000098899 AllianceGenome:ZFIN:ZDB-GENE-140106-42
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 1

Exon count:: 31

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (59555580..59568574, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (58849132..58861924, complement)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables integrin binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info
involved_in cell adhesion mediated by integrin	IBA Inferred from Biological aspect of Ancestor more info
involved_in cell-cell adhesion	IBA Inferred from Biological aspect of Ancestor more info
involved_in cell-matrix adhesion	IBA Inferred from Biological aspect of Ancestor more info
involved_in integrin-mediated signaling pathway	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within integrin-mediated signaling pathway	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in external side of plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
part_of integrin complex	IBA Inferred from Biological aspect of Ancestor more info
part_of integrin complex	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: integrin alpha-D; integrin alpha-L

Names: integrin, alpha D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386624.1 → NP_001373553.1 integrin alpha-D isoform 1 precursor

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).

Source sequence(s)

FO681342

UniProtKB/TrEMBL

A0A8M2BI95

Conserved Domains (3) summary

smart00191
Location:505 → 546

Int_alpha; Integrin alpha (beta-propellor repeats)

pfam08441
Location:602 → 951

Integrin_alpha2; Integrin alpha

cl00057
Location:145 → 314

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
NM_001386625.1 → NP_001373554.1 integrin alpha-D isoform 2 precursor

Status: VALIDATED

Source sequence(s)

FO681342

UniProtKB/TrEMBL

A0A8M2BIC7

Conserved Domains (3) summary

smart00191
Location:502 → 543

Int_alpha; Integrin alpha (beta-propellor repeats)

pfam08441
Location:599 → 948

Integrin_alpha2; Integrin alpha

cl00057
Location:145 → 314

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007112.7 Reference GRCz11 Primary Assembly

Range

59555580..59568574 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005171063.4 → XP_005171120.1 integrin alpha-L isoform X1

Related

ENSDARP00000133024.2, ENSDART00000159144.2

Conserved Domains (3) summary

smart00191
Location:505 → 546

Int_alpha; Integrin alpha (beta-propellor repeats)

pfam08441
Location:602 → 951

Integrin_alpha2; Integrin alpha

cl00057
Location:145 → 314

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_005171064.4 → XP_005171121.1 integrin alpha-L isoform X2

Conserved Domains (3) summary

smart00191
Location:502 → 543

Int_alpha; Integrin alpha (beta-propellor repeats)

pfam08441
Location:599 → 948

Integrin_alpha2; Integrin alpha

cl00057
Location:145 → 314

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...