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sstr1b somatostatin receptor 1b [ Danio rerio (zebrafish) ]

Gene ID: 557645, updated on 11-Apr-2024

Summary

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Official Symbol
sstr1bprovided by ZNC
Official Full Name
somatostatin receptor 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-120410-2
See related
Ensembl:ENSDARG00000067925 AllianceGenome:ZFIN:ZDB-GENE-120410-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable somatostatin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SSTR4 (somatostatin receptor 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See sstr1b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (18414913..18445764, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (18162689..18193789, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene Ras converting CAAX endopeptidase 1a Neighboring gene CD248 molecule, endosialin a Neighboring gene zinc finger protein 16 like Neighboring gene regulator of G protein signaling 12a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Pharmacological characterization of a nociceptin receptor from zebrafish (Danio rerio). Rivas-Boyero AA, et al. J Mol Endocrinol, 2011 Apr. PMID 21247980
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables somatostatin receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
somatostatin receptor type 1-like
Names
somatostatin receptor type 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    18414913..18445764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172218.4 → XP_005172275.1  somatostatin receptor type 1-like

    UniProtKB/TrEMBL
    A0A1D5NSQ4, A0A455LLX9
    Related
    ENSDARP00000142871.1, ENSDART00000173746.2
    Conserved Domains (2) summary
    pfam00001
    Location:55 → 301
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:47 → 198
    7tm_4; Olfactory receptor
Nucleotide Protein
Heading Accession and Version

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