idi1 isopentenyl-diphosphate delta isomerase 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: idi1provided by ZNC
Official Full Name: isopentenyl-diphosphate delta isomerase 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-050913-44
See related: Ensembl:ENSDARG00000019976 AllianceGenome:ZFIN:ZDB-GENE-050913-44
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:114138
Summary: Predicted to enable isopentenyl-diphosphate delta-isomerase activity. Predicted to be involved in isopentenyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Orthologous to several human genes including IDI1 (isopentenyl-diphosphate delta isomerase 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 24

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (3469372..3477162, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (3437586..3445386, complement)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc81a11.y1 (e-PCR)
- UniSTS:194582

fb71a04.x1 (e-PCR)
- UniSTS:191041

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables isomerase activity	IEA Inferred from Electronic Annotation more info
enables isopentenyl-diphosphate delta-isomerase activity	IBA Inferred from Biological aspect of Ancestor more info
enables isopentenyl-diphosphate delta-isomerase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in dimethylallyl diphosphate biosynthetic process	IEA Inferred from Electronic Annotation more info
involved_in isopentenyl diphosphate biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within isoprenoid biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: isopentenyl-diphosphate Delta-isomerase 1

NP_001020646.1

EC 5.3.3.2

XP_005162565.1

EC 5.3.3.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001025475.1 → NP_001020646.1 isopentenyl-diphosphate Delta-isomerase 1

See identical proteins and their annotated locations for NP_001020646.1

Status: PROVISIONAL

Source sequence(s)

BC097193

UniProtKB/TrEMBL

Q4V8U6

Conserved Domains (2) summary

COG1443
Location:19 → 208

Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]

cl00447
Location:1 → 227

Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007135.7 Reference GRCz11 Primary Assembly

Range

3469372..3477162 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005162508.4 → XP_005162565.1 isopentenyl-diphosphate Delta-isomerase 1 isoform X1

UniProtKB/TrEMBL

A0A8M2B9B7, F1QVG2

Related

ENSDARP00000122260.1, ENSDART00000143723.2

Conserved Domains (2) summary

COG1443
Location:70 → 259

Idi; Isopentenyldiphosphate isomerase [Lipid transport and metabolism]

cl00447
Location:49 → 278

Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...