U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CACNA1F calcium voltage-gated channel subunit alpha1 F [ Bos taurus (cattle) ]

Gene ID: 509779, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
CACNA1Fprovided by VGNC
Official Full Name
calcium voltage-gated channel subunit alpha1 Fprovided by VGNC
Primary source
VGNC:VGNC:26676
See related
BGD:BT24811; Ensembl:ENSBTAG00000016097
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CACNA1F in Genome Data Viewer
Location:
chromosome: X
Exon count:
48
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (87245326..87272781, complement)

Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene prickle planar cell polarity protein 3 Neighboring gene synaptophysin Neighboring gene small ribosomal subunit protein uS2-like Neighboring gene coiled-coil domain containing 22 Neighboring gene forkhead box P3 Neighboring gene protein phosphatase 1 regulatory subunit 3F

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
voltage-dependent L-type calcium channel subunit alpha-1F

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205663.1 → NP_001192592.1  voltage-dependent L-type calcium channel subunit alpha-1F

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000030
    UniProtKB/TrEMBL
    E1B9S9
    Related
    ENSBTAP00000021433.5, ENSBTAT00000021433.6
    Conserved Domains (4) summary
    pfam00520
    Location:1203 → 1448
    Ion_trans; Ion transport protein
    pfam08763
    Location:1521 → 1592
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1616 → 1969
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1456 → 1519
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    87245326..87272781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059883331.1 → XP_059739314.1  voltage-dependent L-type calcium channel subunit alpha-1F isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.