Selenov selenoprotein V [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Selenovprovided by RGD
Official Full Name: selenoprotein Vprovided by RGD
Primary source: RGD:1562943
See related: Ensembl:ENSRNOG00000051208 AllianceGenome:RGD:1562943
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Selv; RGD1562943
Summary: This gene encodes a selenoprotein containing a selenocysteine (Sec) residue, which is encoded by the UGA codon that normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, the Sec insertion sequence (SECIS) element, which is necessary for the recognition of UGA as a Sec codon rather than as a stop signal. This protein is specifically expressed in the testis. It belongs to the SelWTH family, which possesses a thioredoxin-like fold and a conserved CxxU (C is cysteine, U is Sec) motif, suggesting a redox function for this gene. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Apr 2017]
Expression: Restricted expression toward (RPKM 118.4) See more
Orthologs: human mouse all
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Genomic context

Location:: 1q21

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (92679034..92686320, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (83551473..83558756, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (85496940..85504189)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Gpx4, Selenov, and Txnrd3 Are Three Most Testis-Abundant Selenogenes Resistant to Dietary Selenium Concentrations and Actively Expressed During Reproductive Ages in Rats.
Title: Gpx4, Selenov, and Txnrd3 Are Three Most Testis-Abundant Selenogenes Resistant to Dietary Selenium Concentrations and Actively Expressed During Reproductive Ages in Rats.
expression of SelV mRNA in the later stages spermatogenesis, as well as in puberty and reproductive periods of rats is shown.
Title: [The search of partners of a new mammalian selenium-containing protein V (SelV) and expression it's mRNA during ontogenesis and spermatogenesis].

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in response to selenium ion	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: selenoprotein V

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001166396.1 → NP_001159868.1 selenoprotein V

Status: REVIEWED

Description

Transcript Variant: This variant (1) represents the predominant transcript, and encodes a selenoprotein.

Source sequence(s)

BC158767, JAXUCZ010000001

UniProtKB/TrEMBL

A0A0G2JXK3

Related

ENSRNOP00000070306.1, ENSRNOT00000087175.2

Conserved Domains (1) summary

TIGR02174
Location:245 → 318

CXXU_selWTH; selT/selW/selH selenoprotein domain

RNA

NR_146923.1 RNA Sequence

Status: REVIEWED

Description

Transcript Variant: This variant (2) uses an alternate donor splice site at the 5' terminal exon compared to variant 1. It is represented as non-coding because the use of the 5'-most translation start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).

Source sequence(s)

BC158767, JAXUCZ010000001
NR_146924.1 RNA Sequence

Status: REVIEWED

Description

Transcript Variant: This variant (3) uses an alternate donor splice site at the 5' terminal exon, and lacks an internal exon compared to variant 1. It is represented as non-coding because the use of the 5'-most translation start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).

Source sequence(s)

BC158767, JAXUCZ010000001