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fgf11a fibroblast growth factor 11a [ Danio rerio (zebrafish) ]

Gene ID: 497640, updated on 27-Mar-2024

Summary

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Official Symbol
fgf11aprovided by ZNC
Official Full Name
fibroblast growth factor 11aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050221-5
See related
Ensembl:ENSDARG00000069662 AllianceGenome:ZFIN:ZDB-GENE-050221-5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fgf11
Summary
Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus. Is expressed in kidney. Orthologous to human FGF11 (fibroblast growth factor 11). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (22398266..22526079)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (22127067..22255590)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 256 Neighboring gene transmembrane protein 102 Neighboring gene cholinergic receptor, nicotinic, beta 1 (muscle) Neighboring gene cholinergic receptor, nicotinic, beta 1 (muscle) like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comparative genomics on Fgf11 orthologs. Katoh Y, et al. Oncol Rep, 2005 Jul. PMID 15944803
  2. The zebrafish fgf family. Itoh N, et al. Zebrafish, 2007 Fall. PMID 18041922
  3. The zebrafish secretome. Klee EW. Zebrafish, 2008 Summer. PMID 18554177, Free PMC Article
  4. Differential expression of neuroligin genes in the nervous system of zebrafish. Davey C, et al. Dev Dyn, 2010 Feb. PMID 20063411, Free PMC Article
  5. Fgf signalling controls diverse aspects of fin regeneration. Shibata E, et al. Development, 2016 Aug 15. PMID 27402707

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
  
enables sodium channel regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of voltage-gated sodium channel activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
fibroblast growth factor 11; fibroblast growth factor 11a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012380.1 → NP_001012380.1  fibroblast growth factor 11a

    See identical proteins and their annotated locations for NP_001012380.1

    Status: PROVISIONAL

    Source sequence(s)
    AB195617
    UniProtKB/TrEMBL
    Q5TKR4
    Conserved Domains (1) summary
    pfam00167
    Location:72 → 197
    FGF; Fibroblast growth factor

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    22398266..22526079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477520.1 → XP_021333195.1  fibroblast growth factor 11 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QGZ2
    Related
    ENSDARP00000144353.1, ENSDART00000174483.2
    Conserved Domains (1) summary
    pfam00167
    Location:72 → 197
    FGF; Fibroblast growth factor

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394687.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    75917..191517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395264.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    74492..200068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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