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TGFB1I1 transforming growth factor beta 1 induced transcript 1 [ Canis lupus familiaris (dog) ]

Gene ID: 489932, updated on 5-Mar-2024

Summary

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Official Symbol
TGFB1I1provided by VGNC
Official Full Name
transforming growth factor beta 1 induced transcript 1provided by VGNC
Primary source
VGNC:VGNC:47308
See related
Ensembl:ENSCAFG00845010573
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (16900261..16905818, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (18384792..18390345)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (16935200..16940744, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (16703863..16709400, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (16623496..16629008, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene alpha hemoglobin stabilizing protein Neighboring gene RUS family member 1 Neighboring gene solute carrier family 5 member 2 Neighboring gene armadillo repeat containing 5 Neighboring gene integrin subunit alpha D Neighboring gene cytochrome c oxidase subunit 6A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor beta-1-induced transcript 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    16900261..16905818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668531.1 → XP_038524459.1  transforming growth factor beta-1-induced transcript 1 protein

    UniProtKB/TrEMBL
    A0A8C0L2N5, A0A8C0S479, A0A8I3NG43
    Related
    ENSCAFP00845014846.1, ENSCAFT00845019004.1
    Conserved Domains (5) summary
    cd09337
    Location:290 → 341
    LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
    cd09409
    Location:349 → 401
    LIM3_Paxillin; The third LIM domain of paxillin
    cd09412
    Location:408 → 459
    LIM4_Leupaxin; The fourth LIM domain of Leupaxin
    pfam03535
    Location:28 → 106
    Paxillin; Paxillin family
    cl02475
    Location:231 → 283
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    16703863..16709400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038478474.1 → XP_038334402.1  transforming growth factor beta-1-induced transcript 1 protein

    Conserved Domains (5) summary
    cd09337
    Location:290 → 341
    LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
    cd09409
    Location:349 → 401
    LIM3_Paxillin; The third LIM domain of paxillin
    cd09412
    Location:408 → 459
    LIM4_Leupaxin; The fourth LIM domain of Leupaxin
    pfam03535
    Location:28 → 106
    Paxillin; Paxillin family
    cl02475
    Location:231 → 283
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    16623496..16629008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038603813.1 → XP_038459741.1  transforming growth factor beta-1-induced transcript 1 protein

    Conserved Domains (5) summary
    cd09337
    Location:290 → 341
    LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
    cd09409
    Location:349 → 401
    LIM3_Paxillin; The third LIM domain of paxillin
    cd09412
    Location:408 → 459
    LIM4_Leupaxin; The fourth LIM domain of Leupaxin
    pfam03535
    Location:28 → 106
    Paxillin; Paxillin family
    cl02475
    Location:231 → 283
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    16935200..16940744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539728.1 → XP_038395656.1  transforming growth factor beta-1-induced transcript 1 protein

    UniProtKB/TrEMBL
    A0A8C0L2N5, A0A8C0S479, A0A8I3NG43
    Conserved Domains (5) summary
    cd09337
    Location:290 → 341
    LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
    cd09409
    Location:349 → 401
    LIM3_Paxillin; The third LIM domain of paxillin
    cd09412
    Location:408 → 459
    LIM4_Leupaxin; The fourth LIM domain of Leupaxin
    pfam03535
    Location:28 → 106
    Paxillin; Paxillin family
    cl02475
    Location:231 → 283
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    18384792..18390345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005621229.3 → XP_005621286.1  transforming growth factor beta-1-induced transcript 1 protein

    UniProtKB/TrEMBL
    A0A8C0L2N5, A0A8C0S479, A0A8I3NG43
    Conserved Domains (5) summary
    cd09337
    Location:290 → 341
    LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
    cd09409
    Location:349 → 401
    LIM3_Paxillin; The third LIM domain of paxillin
    cd09412
    Location:408 → 459
    LIM4_Leupaxin; The fourth LIM domain of Leupaxin
    pfam03535
    Location:28 → 106
    Paxillin; Paxillin family
    cl02475
    Location:231 → 283
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
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