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NR2F1 nuclear receptor subfamily 2 group F member 1 [ Canis lupus familiaris (dog) ]

Gene ID: 488908, updated on 5-Mar-2024

Summary

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Official Symbol
NR2F1provided by VGNC
Official Full Name
nuclear receptor subfamily 2 group F member 1provided by VGNC
Primary source
VGNC:VGNC:111600
See related
Ensembl:ENSCAFG00845015564
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (15603857..15613637, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (17056142..17065912, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (15764483..15774264, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (15559980..15569747, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (15546214..15555980, complement)

Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene KIAA0825 Neighboring gene uncharacterized LOC106558567 Neighboring gene ARB2 cotranscriptional regulator A Neighboring gene uncharacterized LOC111095134 Neighboring gene uncharacterized LOC102151182 Neighboring gene ATP synthase subunit d, mitochondrial-like Neighboring gene uncharacterized LOC119871118 Neighboring gene uncharacterized LOC111095135

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COUP transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051807.1 Reference ROS_Cfam_1.0

    Range
    15603857..15613637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038660825.1 → XP_038516753.1  COUP transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q1D6, A0A8I3NLS0, A0A8P0PMT3
    Related
    ENSCAFP00845021873.1, ENSCAFT00845027791.1
    Conserved Domains (2) summary
    cd06948
    Location:184 → 419
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:86 → 158
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  2. XM_038660828.1 → XP_038516756.1  COUP transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  3. XM_038660826.1 → XP_038516754.1  COUP transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:34 → 269
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  4. XM_038660827.1 → XP_038516755.1  COUP transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049263.1 Alternate UMICH_Zoey_3.1

    Range
    15559980..15569747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038471400.1 → XP_038327328.1  COUP transcription factor 1 isoform X1

    Conserved Domains (2) summary
    cd06948
    Location:184 → 419
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:86 → 158
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  2. XM_038471403.1 → XP_038327331.1  COUP transcription factor 1 isoform X3

    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  3. XM_038471401.1 → XP_038327329.1  COUP transcription factor 1 isoform X2

    Conserved Domains (1) summary
    cd06948
    Location:34 → 269
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  4. XM_038471402.1 → XP_038327330.1  COUP transcription factor 1 isoform X3

    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

    Range
    15546214..15555980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038596604.1 → XP_038452532.1  COUP transcription factor 1 isoform X1

    Conserved Domains (2) summary
    cd06948
    Location:184 → 419
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:86 → 158
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  2. XM_038596607.1 → XP_038452535.1  COUP transcription factor 1 isoform X3

    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  3. XM_038596605.1 → XP_038452533.1  COUP transcription factor 1 isoform X2

    Conserved Domains (1) summary
    cd06948
    Location:34 → 269
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  4. XM_038596606.1 → XP_038452534.1  COUP transcription factor 1 isoform X3

    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

    Range
    15764483..15774264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038532339.1 → XP_038388267.1  COUP transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q1D6, A0A8I3NLS0, A0A8P0PMT3
    Conserved Domains (2) summary
    cd06948
    Location:184 → 419
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:86 → 158
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  2. XM_038532342.1 → XP_038388270.1  COUP transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  3. XM_038532340.1 → XP_038388268.1  COUP transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:34 → 269
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  4. XM_038532341.1 → XP_038388269.1  COUP transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    17056142..17065912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022416724.2 → XP_022272432.2  COUP transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0Q1D6, A0A8I3NLS0, A0A8P0PMT3
    Conserved Domains (2) summary
    cd06948
    Location:184 → 419
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:86 → 158
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  2. XM_038470150.1 → XP_038326078.1  COUP transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  3. XM_038470132.1 → XP_038326060.1  COUP transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:34 → 269
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family

  4. XM_038470141.1 → XP_038326069.1  COUP transcription factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0PSU0
    Conserved Domains (1) summary
    cd06948
    Location:24 → 259
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
Nucleotide Protein
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