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HDAC1 histone deacetylase 1 [ Canis lupus familiaris (dog) ]

Gene ID: 487309, updated on 5-Mar-2024

Summary

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Official Symbol
HDAC1provided by VGNC
Official Full Name
histone deacetylase 1provided by VGNC
Primary source
VGNC:VGNC:50625
See related
Ensembl:ENSCAFG00845004966
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (69467855..69503012, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (65482127..65517259, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (68299008..68334559, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (66304797..66339911, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (67300918..67335502, complement)

Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119870356 Neighboring gene MARCKS like 1 Neighboring gene LCK proto-oncogene, Src family tyrosine kinase Neighboring gene family with sequence similarity 167 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 1
XP_022267756.1
XP_038326320.1
XP_038326321.1
XP_038387160.1
XP_038387161.1
XP_038451383.1
XP_038515465.1
XP_038515466.1
XP_544435.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051806.1 Reference ROS_Cfam_1.0

    Range
    69467855..69503012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038659537.1 → XP_038515465.1  histone deacetylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MAX5
    Conserved Domains (1) summary
    cl17011
    Location:56 → 413
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_038659538.1 → XP_038515466.1  histone deacetylase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LN10, A0A8C0NQ85, A0A8I3MVP1
    Related
    ENSCAFP00845006998.1, ENSCAFT00845008885.1
    Conserved Domains (1) summary
    cd10010
    Location:4 → 374
    HDAC1; Histone deacetylase 1 (HDAC1)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049262.1 Alternate UMICH_Zoey_3.1

    Range
    66304797..66339911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038470392.1 → XP_038326320.1  histone deacetylase 1 isoform X1

    Conserved Domains (1) summary
    cl17011
    Location:56 → 413
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_038470393.1 → XP_038326321.1  histone deacetylase 1 isoform X2

    Conserved Domains (1) summary
    cd10010
    Location:4 → 374
    HDAC1; Histone deacetylase 1 (HDAC1)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

    Range
    67300918..67335502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038595455.1 → XP_038451383.1  histone deacetylase 1 isoform X2

    Conserved Domains (1) summary
    cd10010
    Location:4 → 374
    HDAC1; Histone deacetylase 1 (HDAC1)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

    Range
    68299008..68334559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038531232.1 → XP_038387160.1  histone deacetylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MAX5
    Conserved Domains (1) summary
    cl17011
    Location:56 → 413
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_038531233.1 → XP_038387161.1  histone deacetylase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LN10, A0A8C0NQ85, A0A8I3MVP1
    Conserved Domains (1) summary
    cd10010
    Location:4 → 374
    HDAC1; Histone deacetylase 1 (HDAC1)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    65482127..65517259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022412048.1 → XP_022267756.1  histone deacetylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MAX5
    Conserved Domains (1) summary
    cl17011
    Location:56 → 413
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_544435.7 → XP_544435.2  histone deacetylase 1 isoform X2

    See identical proteins and their annotated locations for XP_544435.2

    UniProtKB/TrEMBL
    A0A8C0LN10, A0A8C0NQ85, A0A8I3MVP1
    Conserved Domains (1) summary
    cd10010
    Location:4 → 374
    HDAC1; Histone deacetylase 1 (HDAC1)
Nucleotide Protein
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