KLF6 KLF transcription factor 6 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: KLF6provided by VGNC
Official Full Name: KLF transcription factor 6provided by VGNC
Primary source: VGNC:VGNC:52142
See related: Ensembl:ENSCAFG00845003083
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	2	NC_051806.1 (32036878..32046413)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	2	NC_006584.4 (28683538..28693072)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	2	NC_049223.1 (30688899..30698432)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	2	NC_049262.1 (29123207..29131390)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	2	NC_049743.1 (29962128..29971626)

Chromosome 2 - NC_051806.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: Krueppel-like factor 6

Names: Kruppel like factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051806.1 Reference ROS_Cfam_1.0

Range

32036878..32046413

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038658502.1 → XP_038514430.1 Krueppel-like factor 6

UniProtKB/TrEMBL

A0A8C0JSC7, A0A8C0PUU1, A0A8I3MQ03

Related

ENSCAFP00845004325.1, ENSCAFT00845005440.1

Conserved Domains (4) summary

COG5048
Location:185 → 265

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:205 → 224

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:260 → 282

zf-C2H2; Zinc finger, C2H2 type

cd21586
Location:2 → 201

KLF6_N; N-terminal domain of Kruppel-like factor 6

Alternate UMICH_Zoey_3.1

Genomic

NC_049262.1 Alternate UMICH_Zoey_3.1

Range

29123207..29131390

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038469450.1 → XP_038325378.1 Krueppel-like factor 6

Conserved Domains (4) summary

COG5048
Location:185 → 265

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:205 → 224

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:260 → 282

zf-C2H2; Zinc finger, C2H2 type

cd21586
Location:2 → 201

KLF6_N; N-terminal domain of Kruppel-like factor 6

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049743.1 Alternate UNSW_CanFamBas_1.0

Range

29962128..29971626

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038594458.1 → XP_038450386.1 Krueppel-like factor 6

Conserved Domains (4) summary

COG5048
Location:185 → 265

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:205 → 224

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:260 → 282

zf-C2H2; Zinc finger, C2H2 type

cd21586
Location:2 → 201

KLF6_N; N-terminal domain of Kruppel-like factor 6

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049223.1 Alternate UU_Cfam_GSD_1.0

Range

30688899..30698432

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038530210.1 → XP_038386138.1 Krueppel-like factor 6

UniProtKB/TrEMBL

A0A8C0JSC7, A0A8C0PUU1, A0A8I3MQ03

Conserved Domains (4) summary

COG5048
Location:185 → 265

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:205 → 224

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:260 → 282

zf-C2H2; Zinc finger, C2H2 type

cd21586
Location:2 → 201

KLF6_N; N-terminal domain of Kruppel-like factor 6

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

28683538..28693072

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_544279.7 → XP_544279.3 Krueppel-like factor 6

UniProtKB/TrEMBL

A0A8C0JSC7, A0A8C0PUU1, A0A8I3MQ03

Conserved Domains (4) summary

COG5048
Location:185 → 265

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:205 → 224

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:260 → 282

zf-C2H2; Zinc finger, C2H2 type

cd21586
Location:2 → 201

KLF6_N; N-terminal domain of Kruppel-like factor 6