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MSC musculin [ Canis lupus familiaris (dog) ]

Gene ID: 486992, updated on 5-Mar-2024

Summary

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Official Symbol
MSCprovided by VGNC
Official Full Name
musculinprovided by VGNC
Primary source
VGNC:VGNC:43436
See related
Ensembl:ENSCAFG00845026981
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
MYOR
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 29
Exon count:
2
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 29 NC_051833.1 (20898313..20900934, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 29 NC_006611.4 (21058719..21061346, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 29 NC_049250.1 (21282344..21284967, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 29 NC_049289.1 (20946878..20949500, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 29 NC_049770.1 (20999799..21002418, complement)

Chromosome 29 - NC_051833.1Genomic Context describing neighboring genes Neighboring gene EYA transcriptional coactivator and phosphatase 1 Neighboring gene uncharacterized LOC111093119 Neighboring gene uncharacterized LOC119866675 Neighboring gene uncharacterized LOC111093170 Neighboring gene small nucleolar RNA SNORA63 Neighboring gene nuclear transport factor 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and analysis of basic helix-loop-helix domains in dog, Canis lupus familiaris. Wang XH, et al. Mol Genet Genomics, 2015 Apr. PMID 25403511

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
musculin
Names
musculin (activated B-cell factor-1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051833.1 Reference ROS_Cfam_1.0

    Range
    20898313..20900934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038441379.1 → XP_038297307.1  musculin

    UniProtKB/TrEMBL
    A0A8C0KW50, A0A8C0MXG6, A0A8I3PT78
    Related
    ENSCAFP00845037289.1, ENSCAFT00845047523.1
    Conserved Domains (1) summary
    cd19703
    Location:97 → 162
    bHLH_TS_musculin; basic helix-loop-helix (bHLH) domain found in musculin and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049289.1 Alternate UMICH_Zoey_3.1

    Range
    20946878..20949500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515957.1 → XP_038371885.1  musculin

    Conserved Domains (1) summary
    cd19703
    Location:97 → 162
    bHLH_TS_musculin; basic helix-loop-helix (bHLH) domain found in musculin and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049770.1 Alternate UNSW_CanFamBas_1.0

    Range
    20999799..21002418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038643768.1 → XP_038499696.1  musculin

    Conserved Domains (1) summary
    cd19703
    Location:97 → 162
    bHLH_TS_musculin; basic helix-loop-helix (bHLH) domain found in musculin and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049250.1 Alternate UU_Cfam_GSD_1.0

    Range
    21282344..21284967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038579516.1 → XP_038435444.1  musculin

    UniProtKB/TrEMBL
    A0A8C0KW50, A0A8C0MXG6, A0A8I3PT78
    Conserved Domains (1) summary
    cd19703
    Location:97 → 162
    bHLH_TS_musculin; basic helix-loop-helix (bHLH) domain found in musculin and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006611.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    21058719..21061346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_544121.5 → XP_544121.2  musculin

    UniProtKB/TrEMBL
    A0A8C0KW50, A0A8C0MXG6, A0A8I3PT78
    Conserved Domains (1) summary
    cd19703
    Location:97 → 162
    bHLH_TS_musculin; basic helix-loop-helix (bHLH) domain found in musculin and similar proteins
Nucleotide Protein
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