SCD stearoyl-CoA desaturase [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: SCDprovided by VGNC
Official Full Name: stearoyl-CoA desaturaseprovided by VGNC
Primary source: VGNC:VGNC:45900
See related: Ensembl:ENSCAFG00845016649
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human all
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Genomic context

Location:: chromosome: 28

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	28	NC_051832.1 (13581765..13598163)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	28	NC_006610.4 (13283628..13300028)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	28	NC_049249.1 (13300894..13317236)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	28	NC_049288.1 (13128503..13144867)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	28	NC_049769.1 (13166524..13182907)

Chromosome 28 - NC_051832.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables iron ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables palmitoyl-CoA 9-desaturase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables stearoyl-CoA 9-desaturase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in response to fatty acid	IEA Inferred from Electronic Annotation more info	PubMed
involved_in unsaturated fatty acid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: acyl-CoA desaturase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051832.1 Reference ROS_Cfam_1.0

Range

13581765..13598163

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038440281.1 → XP_038296209.1 acyl-CoA desaturase

UniProtKB/TrEMBL

A0A8C0K365, A0A8C0NMY4, A0A8I3P0C1, A0A8I3P0T0, A0A8P0SUX1

Related

ENSCAFP00845023182.1, ENSCAFT00845029510.1

Conserved Domains (1) summary

cd03505
Location:101 → 338

Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

Alternate UMICH_Zoey_3.1

Genomic

NC_049288.1 Alternate UMICH_Zoey_3.1

Range

13128503..13144867

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038514897.1 → XP_038370825.1 acyl-CoA desaturase

Conserved Domains (1) summary

cd03505
Location:101 → 338

Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049769.1 Alternate UNSW_CanFamBas_1.0

Range

13166524..13182907

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038642694.1 → XP_038498622.1 acyl-CoA desaturase

Conserved Domains (1) summary

cd03505
Location:101 → 338

Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049249.1 Alternate UU_Cfam_GSD_1.0

Range

13300894..13317236

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038578528.1 → XP_038434456.1 acyl-CoA desaturase

UniProtKB/TrEMBL

A0A8C0K365, A0A8C0NMY4, A0A8I3P0C1, A0A8I3P0T0, A0A8P0SUX1

Conserved Domains (1) summary

cd03505
Location:101 → 338

Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

13283628..13300028

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_543968.7 → XP_543968.2 acyl-CoA desaturase

UniProtKB/TrEMBL

A0A8C0K365, A0A8C0NMY4, A0A8I3P0C1, A0A8I3P0T0, A0A8P0SUX1

Conserved Domains (1) summary

cd03505
Location:101 → 338

Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...