U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FRAT1 frequently rearranged in advanced T-cell lymphomas [ Canis lupus familiaris (dog) ]

Gene ID: 486819, updated on 22-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
FRAT1
Gene description
frequently rearranged in advanced T-cell lymphomas
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 28
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (10957885..10959315)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (10818762..10820186)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (10819915..10821339)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (10619293..10620673)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (10679985..10681409)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106557943 Neighboring gene Rho GTPase activating protein 19 Neighboring gene GSK-3-binding protein FRAT2-like Neighboring gene ribosomal RNA processing 12 homolog Neighboring gene uncharacterized LOC119866568

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
proto-oncogene FRAT1; LOW QUALITY PROTEIN: proto-oncogene FRAT1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    10957885..10959315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038439677.1 → XP_038295605.1  proto-oncogene FRAT1

    Conserved Domains (1) summary
    pfam05350
    Location:1 → 242
    GSK-3_bind; Glycogen synthase kinase-3 binding

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    10619293..10620673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515653.1 → XP_038371581.1  LOW QUALITY PROTEIN: proto-oncogene FRAT1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    10679985..10681409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642575.1 → XP_038498503.1  proto-oncogene FRAT1

    Conserved Domains (1) summary
    pfam05350
    Location:1 → 240
    GSK-3_bind; Glycogen synthase kinase-3 binding

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    10819915..10821339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038577951.1 → XP_038433879.1  proto-oncogene FRAT1

    UniProtKB/TrEMBL
    A0A8C0P7J5, A0A8C0QW71, A0A8P0TAL6
    Conserved Domains (1) summary
    pfam05350
    Location:1 → 240
    GSK-3_bind; Glycogen synthase kinase-3 binding

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    10818762..10820186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014109134.3 → XP_013964609.2  proto-oncogene FRAT1

    UniProtKB/TrEMBL
    A0A8C0P7J5, A0A8C0QW71, A0A8P0TAL6
    Conserved Domains (1) summary
    pfam05350
    Location:1 → 240
    GSK-3_bind; Glycogen synthase kinase-3 binding
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous