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ATF1 activating transcription factor 1 [ Canis lupus familiaris (dog) ]

Gene ID: 486545, updated on 5-Mar-2024

Summary

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Official Symbol
ATF1provided by VGNC
Official Full Name
activating transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:38207
See related
Ensembl:ENSCAFG00845016253
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 27
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (3965558..4040154, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (42264552..42352571)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (42659869..42734156)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (3918858..4006920, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (3906679..3994477, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866367 Neighboring gene transmembrane serine protease 12 Neighboring gene disco interacting protein 2 homolog B Neighboring gene 60S acidic ribosomal protein P1-like Neighboring gene La ribonucleoprotein 4 Neighboring gene family with sequence similarity 186 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    3965558..4040154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438193.1 → XP_038294121.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KPS1, A0A8I3RZ79, A0A8P0T2W6
    Related
    ENSCAFP00845022752.1, ENSCAFT00845028916.1
    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  2. XM_038438194.1 → XP_038294122.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KLB2, A0A8C0PHZ7, A0A8I3NUJ6
    Related
    ENSCAFP00845022733.1, ENSCAFT00845028893.1
    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

RNA

  1. XR_005302886.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    3918858..4006920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512888.1 → XP_038368816.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  2. XM_038512887.1 → XP_038368815.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  3. XM_038512894.1 → XP_038368822.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

  4. XM_038512892.1 → XP_038368820.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

  5. XM_038512885.1 → XP_038368813.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  6. XM_038512886.1 → XP_038368814.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  7. XM_038512893.1 → XP_038368821.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

  8. XM_038512890.1 → XP_038368818.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  9. XM_038512889.1 → XP_038368817.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

  10. XM_038512895.1 → XP_038368823.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

  11. XM_038512896.1 → XP_038368824.1  cyclic AMP-dependent transcription factor ATF-1 isoform X4

  12. XM_038512891.1 → XP_038368819.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

RNA

  1. XR_005346011.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    3906679..3994477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640647.1 → XP_038496575.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  2. XM_038640655.1 → XP_038496583.1  cyclic AMP-dependent transcription factor ATF-1 isoform X7

  3. XM_038640646.1 → XP_038496574.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  4. XM_038640660.1 → XP_038496588.1  cyclic AMP-dependent transcription factor ATF-1 isoform X8

  5. XM_038640644.1 → XP_038496572.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  6. XM_038640654.1 → XP_038496582.1  cyclic AMP-dependent transcription factor ATF-1 isoform X7

  7. XM_038640652.1 → XP_038496580.1  cyclic AMP-dependent transcription factor ATF-1 isoform X7

  8. XM_038640645.1 → XP_038496573.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  9. XM_038640653.1 → XP_038496581.1  cyclic AMP-dependent transcription factor ATF-1 isoform X7

  10. XM_038640649.1 → XP_038496577.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  11. XM_038640657.1 → XP_038496585.1  cyclic AMP-dependent transcription factor ATF-1 isoform X7

  12. XM_038640648.1 → XP_038496576.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

  13. XM_038640656.1 → XP_038496584.1  cyclic AMP-dependent transcription factor ATF-1 isoform X7

  14. XM_038640650.1 → XP_038496578.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

  15. XM_038640651.1 → XP_038496579.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

  16. XM_038640658.1 → XP_038496586.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  17. XM_038640659.1 → XP_038496587.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

RNA

  1. XR_005413534.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    42659869..42734156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038577659.1 → XP_038433587.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KPS1, A0A8I3RZ79, A0A8P0T2W6
    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  2. XM_038577660.1 → XP_038433588.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KLB2, A0A8C0PHZ7, A0A8I3NUJ6
    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

RNA

  1. XR_005380146.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    42264552..42352571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022411367.2 → XP_022267075.2  cyclic AMP-dependent transcription factor ATF-1 isoform X9

    UniProtKB/TrEMBL
    A0A8C0PCN7, A0A8P0NAG8
    Conserved Domains (1) summary
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  2. XM_022411374.2 → XP_022267082.2  cyclic AMP-dependent transcription factor ATF-1 isoform X11

    UniProtKB/TrEMBL
    A0A8C0PJP9
    Conserved Domains (1) summary
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  3. XM_022411365.2 → XP_022267073.2  cyclic AMP-dependent transcription factor ATF-1 isoform X9

    UniProtKB/TrEMBL
    A0A8C0PCN7, A0A8P0NAG8
    Conserved Domains (1) summary
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  4. XM_038460111.1 → XP_038316039.1  cyclic AMP-dependent transcription factor ATF-1 isoform X12

  5. XM_022411369.2 → XP_022267077.2  cyclic AMP-dependent transcription factor ATF-1 isoform X9

    UniProtKB/TrEMBL
    A0A8C0PCN7, A0A8P0NAG8
    Conserved Domains (1) summary
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  6. XM_022411372.2 → XP_022267080.2  cyclic AMP-dependent transcription factor ATF-1 isoform X11

    UniProtKB/TrEMBL
    A0A8C0PJP9
    Conserved Domains (1) summary
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  7. XM_022411375.2 → XP_022267083.2  cyclic AMP-dependent transcription factor ATF-1 isoform X11

    UniProtKB/TrEMBL
    A0A8C0PJP9
    Conserved Domains (1) summary
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  8. XM_014108653.3 → XP_013964128.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KPS1, A0A8I3RZ79, A0A8P0T2W6
    Conserved Domains (2) summary
    cd14690
    Location:254 → 308
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  9. XM_543671.7 → XP_543671.2  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KLB2, A0A8C0PHZ7, A0A8I3NUJ6
    Conserved Domains (2) summary
    cd14690
    Location:214 → 268
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  10. XM_022411366.2 → XP_022267074.2  cyclic AMP-dependent transcription factor ATF-1 isoform X9

    UniProtKB/TrEMBL
    A0A8C0PCN7, A0A8P0NAG8
    Conserved Domains (1) summary
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  11. XM_022411373.2 → XP_022267081.2  cyclic AMP-dependent transcription factor ATF-1 isoform X11

    UniProtKB/TrEMBL
    A0A8C0PJP9
    Conserved Domains (1) summary
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  12. XM_038460108.1 → XP_038316036.1  cyclic AMP-dependent transcription factor ATF-1 isoform X9

    UniProtKB/TrEMBL
    A0A8C0PCN7, A0A8P0NAG8
    Conserved Domains (1) summary
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  13. XM_038460110.1 → XP_038316038.1  cyclic AMP-dependent transcription factor ATF-1 isoform X11

    UniProtKB/TrEMBL
    A0A8C0PJP9
    Conserved Domains (1) summary
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  14. XM_038460107.1 → XP_038316035.1  cyclic AMP-dependent transcription factor ATF-1 isoform X9

    UniProtKB/TrEMBL
    A0A8C0PCN7, A0A8P0NAG8
    Conserved Domains (1) summary
    pfam02173
    Location:88 → 122
    pKID; pKID domain

  15. XM_038460109.1 → XP_038316037.1  cyclic AMP-dependent transcription factor ATF-1 isoform X11

    UniProtKB/TrEMBL
    A0A8C0PJP9
    Conserved Domains (1) summary
    pfam02173
    Location:48 → 82
    pKID; pKID domain

  16. XM_022411370.2 → XP_022267078.2  cyclic AMP-dependent transcription factor ATF-1 isoform X10

    UniProtKB/TrEMBL
    A0A8C0PCN7
    Conserved Domains (1) summary
    pfam02173
    Location:57 → 91
    pKID; pKID domain

  17. XM_022411371.2 → XP_022267079.2  cyclic AMP-dependent transcription factor ATF-1 isoform X10

    UniProtKB/TrEMBL
    A0A8C0PCN7
    Conserved Domains (1) summary
    pfam02173
    Location:57 → 91
    pKID; pKID domain

RNA

  1. XR_002620265.2 RNA Sequence

Nucleotide Protein
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