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SCARB1 scavenger receptor class B member 1 [ Canis lupus familiaris (dog) ]

Gene ID: 486241, updated on 5-Mar-2024

Summary

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Official Symbol
SCARB1provided by VGNC
Official Full Name
scavenger receptor class B member 1provided by VGNC
Primary source
VGNC:VGNC:45898
See related
Ensembl:ENSCAFG00845015817
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (5282168..5368989)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (5195714..5282186)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (5260548..5347101)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (5217039..5303430)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (5308627..5394876)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene U6atac minor spliceosomal RNA Neighboring gene transcription and mRNA export factor ENY2-like Neighboring gene uncharacterized LOC111092668 Neighboring gene uncharacterized LOC111092645 Neighboring gene uncharacterized LOC119866119

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol import IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in recognition of apoptotic cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scavenger receptor class B member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    5282168..5368989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038436356.1 → XP_038292284.1  scavenger receptor class B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:55 → 459
    CD36; CD36 family

  2. XM_038436357.1 → XP_038292285.1  scavenger receptor class B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0KK48, A0A8C0TLU5, A0A8P0N9N4, A0A8P0SY70
    Related
    ENSCAFP00845022244.1, ENSCAFT00845028271.1
    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  3. XM_038436359.1 → XP_038292287.1  scavenger receptor class B member 1 isoform X7

    UniProtKB/TrEMBL
    A0A8C0KIR6, A0A8C0TLG2, A0A8I3NZ38, A0A8P0P4R7
    Related
    ENSCAFP00845022369.1, ENSCAFT00845028434.1
    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  4. XM_038436358.1 → XP_038292286.1  scavenger receptor class B member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:42 → 447
    CD36; CD36 family

  5. XM_038436354.1 → XP_038292282.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3RZ24
    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  6. XM_038436355.1 → XP_038292283.1  scavenger receptor class B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  7. XM_038436362.1 → XP_038292290.1  scavenger receptor class B member 1 isoform X9

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:23 → 430
    CD36; CD36 family

  8. XM_038436360.1 → XP_038292288.1  scavenger receptor class B member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8I3RZ34, A0A8P0T145
    Related
    ENSCAFP00845022402.1, ENSCAFT00845028480.1
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 434
    CD36; CD36 family

  9. XM_038436363.1 → XP_038292291.1  scavenger receptor class B member 1 isoform X10

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:3 → 408
    CD36; CD36 family

  10. XM_038436361.1 → XP_038292289.1  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:27 → 434
    CD36; CD36 family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    5217039..5303430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038511277.1 → XP_038367205.1  scavenger receptor class B member 1 isoform X4

    Conserved Domains (1) summary
    pfam01130
    Location:55 → 459
    CD36; CD36 family

  2. XM_038511278.1 → XP_038367206.1  scavenger receptor class B member 1 isoform X5

    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  3. XM_038511280.1 → XP_038367208.1  scavenger receptor class B member 1 isoform X7

    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  4. XM_038511279.1 → XP_038367207.1  scavenger receptor class B member 1 isoform X6

    Conserved Domains (1) summary
    pfam01130
    Location:42 → 447
    CD36; CD36 family

  5. XM_038511275.1 → XP_038367203.1  scavenger receptor class B member 1 isoform X2

    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  6. XM_038511276.1 → XP_038367204.1  scavenger receptor class B member 1 isoform X3

    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  7. XM_038511283.1 → XP_038367211.1  scavenger receptor class B member 1 isoform X9

    Conserved Domains (1) summary
    pfam01130
    Location:23 → 430
    CD36; CD36 family

  8. XM_038511282.1 → XP_038367210.1  scavenger receptor class B member 1 isoform X8

    Conserved Domains (1) summary
    pfam01130
    Location:29 → 434
    CD36; CD36 family

  9. XM_038511284.1 → XP_038367212.1  scavenger receptor class B member 1 isoform X10

    Conserved Domains (1) summary
    pfam01130
    Location:3 → 408
    CD36; CD36 family

  10. XM_038511281.1 → XP_038367209.1  scavenger receptor class B member 1 isoform X11

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    5308627..5394876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638947.1 → XP_038494875.1  scavenger receptor class B member 1 isoform X4

    Conserved Domains (1) summary
    pfam01130
    Location:55 → 459
    CD36; CD36 family

  2. XM_038638948.1 → XP_038494876.1  scavenger receptor class B member 1 isoform X5

    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  3. XM_038638950.1 → XP_038494878.1  scavenger receptor class B member 1 isoform X7

    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  4. XM_038638949.1 → XP_038494877.1  scavenger receptor class B member 1 isoform X6

    Conserved Domains (1) summary
    pfam01130
    Location:42 → 447
    CD36; CD36 family

  5. XM_038638945.1 → XP_038494873.1  scavenger receptor class B member 1 isoform X2

    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  6. XM_038638946.1 → XP_038494874.1  scavenger receptor class B member 1 isoform X3

    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  7. XM_038638953.1 → XP_038494881.1  scavenger receptor class B member 1 isoform X9

  8. XM_038638952.1 → XP_038494880.1  scavenger receptor class B member 1 isoform X8

    Conserved Domains (1) summary
    pfam01130
    Location:29 → 434
    CD36; CD36 family

  9. XM_038638954.1 → XP_038494882.1  scavenger receptor class B member 1 isoform X10

    Conserved Domains (1) summary
    pfam01130
    Location:3 → 408
    CD36; CD36 family

  10. XM_038638951.1 → XP_038494879.1  scavenger receptor class B member 1 isoform X12

    Conserved Domains (1) summary
    pfam01130
    Location:34 → 441
    CD36; CD36 family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    5260548..5347101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038574752.1 → XP_038430680.1  scavenger receptor class B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:55 → 459
    CD36; CD36 family

  2. XM_038574753.1 → XP_038430681.1  scavenger receptor class B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0KK48, A0A8C0TLU5, A0A8P0N9N4, A0A8P0SY70
    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  3. XM_038574755.1 → XP_038430683.1  scavenger receptor class B member 1 isoform X7

    UniProtKB/TrEMBL
    A0A8C0KIR6, A0A8C0TLG2, A0A8I3NZ38, A0A8P0P4R7
    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  4. XM_038574754.1 → XP_038430682.1  scavenger receptor class B member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:42 → 447
    CD36; CD36 family

  5. XM_038574750.1 → XP_038430678.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3RZ24
    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  6. XM_038574751.1 → XP_038430679.1  scavenger receptor class B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  7. XM_038574759.1 → XP_038430687.1  scavenger receptor class B member 1 isoform X9

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:23 → 430
    CD36; CD36 family

  8. XM_038574757.1 → XP_038430685.1  scavenger receptor class B member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8I3RZ34, A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 434
    CD36; CD36 family

  9. XM_038574760.1 → XP_038430688.1  scavenger receptor class B member 1 isoform X10

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:3 → 408
    CD36; CD36 family

  10. XM_038574758.1 → XP_038430686.1  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:27 → 434
    CD36; CD36 family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    5195714..5282186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005636098.1 → XP_005636155.1  scavenger receptor class B member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:55 → 459
    CD36; CD36 family

  2. XM_038458819.1 → XP_038314747.1  scavenger receptor class B member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0KK48, A0A8C0TLU5, A0A8P0N9N4, A0A8P0SY70
    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  3. XM_038458820.1 → XP_038314748.1  scavenger receptor class B member 1 isoform X7

    UniProtKB/TrEMBL
    A0A8C0KIR6, A0A8C0TLG2, A0A8I3NZ38, A0A8P0P4R7
    Conserved Domains (1) summary
    pfam01130
    Location:17 → 447
    CD36; CD36 family

  4. XM_022410704.1 → XP_022266412.1  scavenger receptor class B member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:42 → 447
    CD36; CD36 family

  5. XM_005636096.2 → XP_005636153.1  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3RZ24
    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  6. XM_005636097.2 → XP_005636154.1  scavenger receptor class B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:106 → 511
    CD36; CD36 family

  7. XM_005636101.2 → XP_005636158.1  scavenger receptor class B member 1 isoform X9

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:23 → 430
    CD36; CD36 family

  8. XM_005636100.2 → XP_005636157.1  scavenger receptor class B member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8I3RZ34, A0A8P0T145
    Conserved Domains (1) summary
    pfam01130
    Location:29 → 434
    CD36; CD36 family

  9. XM_005636105.2 → XP_005636162.1  scavenger receptor class B member 1 isoform X10

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:3 → 408
    CD36; CD36 family

  10. XM_038458821.1 → XP_038314749.1  scavenger receptor class B member 1 isoform X13

    UniProtKB/TrEMBL
    A0A8P0N9N4
    Conserved Domains (1) summary
    pfam01130
    Location:34 → 441
    CD36; CD36 family
Nucleotide Protein
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