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RORC RAR related orphan receptor C [ Canis lupus familiaris (dog) ]

Gene ID: 483205, updated on 5-Mar-2024

Summary

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Official Symbol
RORCprovided by VGNC
Official Full Name
RAR related orphan receptor Cprovided by VGNC
Primary source
VGNC:VGNC:45697
See related
Ensembl:ENSCAFG00845025144
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (61838557..61860379, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (60263366..60285188, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (61480593..61502436, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (60665332..60687158, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (60751477..60773308, complement)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene tudor and KH domain containing Neighboring gene leucine rich repeat and Ig domain containing 4 Neighboring gene C2 calcium dependent domain containing 4D Neighboring gene thioesterase superfamily member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor ROR-gamma; LOW QUALITY PROTEIN: nuclear receptor ROR-gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    61838557..61860379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038423217.1 → XP_038279145.1  nuclear receptor ROR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0SSJ2
    Conserved Domains (2) summary
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:269 → 470
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_038423216.1 → XP_038279144.1  nuclear receptor ROR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0MZK9, A0A8C0SSJ2, A0A8I3PTL7
    Related
    ENSCAFP00845034781.1, ENSCAFT00845044385.1
    Conserved Domains (2) summary
    cd06939
    Location:269 → 506
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  3. XM_038423218.1 → XP_038279146.1  nuclear receptor ROR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0K974, A0A8C0MV51, A0A8I3PP78
    Related
    ENSCAFP00845034868.1, ENSCAFT00845044500.1
    Conserved Domains (2) summary
    cd06939
    Location:174 → 411
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cl02596
    Location:1 → 23
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    60665332..60687158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038499702.1 → XP_038355630.1  LOW QUALITY PROTEIN: nuclear receptor ROR-gamma isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    60751477..60773308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038626367.1 → XP_038482295.1  nuclear receptor ROR-gamma isoform X2

    Conserved Domains (2) summary
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:269 → 470
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_038626366.1 → XP_038482294.1  nuclear receptor ROR-gamma isoform X1

    Conserved Domains (2) summary
    cd06939
    Location:269 → 506
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  3. XM_038626368.1 → XP_038482296.1  nuclear receptor ROR-gamma isoform X3

    Conserved Domains (2) summary
    cd06939
    Location:174 → 411
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cl02596
    Location:1 → 23
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    61480593..61502436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038562272.1 → XP_038418200.1  nuclear receptor ROR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0SSJ2
    Conserved Domains (2) summary
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:269 → 470
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_038562271.1 → XP_038418199.1  nuclear receptor ROR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0MZK9, A0A8C0SSJ2, A0A8I3PTL7
    Conserved Domains (2) summary
    cd06939
    Location:269 → 506
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  3. XM_038562273.1 → XP_038418201.1  nuclear receptor ROR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0K974, A0A8C0MV51, A0A8I3PP78
    Conserved Domains (2) summary
    cd06939
    Location:174 → 411
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cl02596
    Location:1 → 23
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    60263366..60285188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005630826.4 → XP_005630883.1  nuclear receptor ROR-gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0SSJ2
    Conserved Domains (2) summary
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:269 → 470
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_005630825.4 → XP_005630882.1  nuclear receptor ROR-gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0MZK9, A0A8C0SSJ2, A0A8I3PTL7
    Conserved Domains (2) summary
    cd06939
    Location:269 → 506
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:24 → 118
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  3. XM_038453350.1 → XP_038309278.1  nuclear receptor ROR-gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0K974, A0A8C0MV51, A0A8I3PP78
    Conserved Domains (2) summary
    cd06939
    Location:174 → 411
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cl02596
    Location:1 → 23
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
Nucleotide Protein
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