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Polr2F RNA polymerase II, I and III subunit F [ Drosophila melanogaster (fruit fly) ]

Gene ID: 48312, updated on 4-Apr-2024

Summary

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Official Symbol
Polr2Fprovided by FlyBase
Official Full Name
RNA polymerase II, I and III subunit Fprovided by FlyBase
Primary source
FLYBASE:FBgn0003275
Locus tag
Dmel_CG1163
See related
AllianceGenome:FB:FBgn0003275
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RH21608; CG1163; Dm6; Dmel\CG1163; H5; pol II; Pol II; polII; PolII; RNA pol II; RNA Pol II; RNA polII; RNA polymerase II; RNAP; RNAP II; RNApolII; RpABC14; RPB6; RPB6_DROME; rpII18; RpII18; RPII18; Rpll18; RPO26
Summary
Predicted to enable DNA binding activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in tRNA transcription by RNA polymerase III; transcription by RNA polymerase I; and transcription by RNA polymerase II. Part of RNA polymerase II, core complex. Orthologous to human POLR2F (RNA polymerase II, I and III subunit F). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See Polr2F in Genome Data Viewer
Location:
83A1-83A1; 3-47.5 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (5371795..5372397)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (1197517..1198119)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44103 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene humpty dumpty Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Paternal transmission of mitochondrial DNA as an integral part of mitochondrial inheritance in metapopulations of Drosophila simulans. Wolff JN, et al. Heredity (Edinb), 2013 Jan. PMID 23010820, Free PMC Article
  2. Determination of Coxiella burnetii rpoB sequence and its use for phylogenetic analysis. Mollet C, et al. Gene, 1998 Jan 19. PMID 9511749
  3. A Drosophila anti-RNA polymerase II antibody recognizes a plant nucleolar antigen, RNA polymerase I, which is mostly localized in fibrillar centres. Martin M, et al. J Cell Sci, 1991 Sep. PMID 1795033
  4. Comparative analysis of four parameters involved in puffing activity along chromosome arm 2L of D melanogaster. Visa N, et al. Biol Cell, 1991. PMID 1726421
  5. Identification of a novel isoform of Cdk9. Shore SM, et al. Gene, 2003 Mar 27. PMID 12706900

See all (97) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
contributes_to RNA polymerase I activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to RNA polymerase I activity ISS
Inferred from Sequence or Structural Similarity
more info
  
contributes_to RNA polymerase II activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to RNA polymerase II activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
contributes_to RNA polymerase III activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to RNA polymerase III activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA transcription by RNA polymerase III ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in transcription by RNA polymerase I IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription by RNA polymerase I ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase I complex ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of RNA polymerase II, core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase II, core complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
  
part_of RNA polymerase II, core complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase III complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA polymerase II, I and III subunit F
Names
CG1163-PA
Polr2F-PA
RNA polymerase II
RNA polymerase II (18-kDa subunit)
RNA polymerase II 18kD subunit
RNA-polymerase ABC 14kD subunit
NP_524910.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    5371795..5372397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_080171.4 → NP_524910.1  RNA polymerase II, I and III subunit F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_524910.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q24320, Q9VNA7
    UniProtKB/TrEMBL
    A0A1B2AK96
    Related
    FBpp0078433
    Conserved Domains (1) summary
    PLN00152
    Location:27 → 130
    PLN00152; DNA-directed RNA polymerase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q24320.1 Q24320

Gene LinkOut

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