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ELK3 ETS transcription factor ELK3 [ Canis lupus familiaris (dog) ]

Gene ID: 482613, updated on 5-Mar-2024

Summary

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Official Symbol
ELK3provided by VGNC
Official Full Name
ETS transcription factor ELK3provided by VGNC
Primary source
VGNC:VGNC:40304
See related
Ensembl:ENSCAFG00845025317
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (36616449..36680834)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (36336857..36401032)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (36246490..36311229)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (35888292..35952734)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (35983301..36047655)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102152760 Neighboring gene uncharacterized LOC111090047 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene cyclin dependent kinase 17 Neighboring gene 60S ribosomal protein L38-like Neighboring gene ribosomal protein S6 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ETS domain-containing protein Elk-3
Names
ELK3, ETS transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    36616449..36680834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038688290.1 → XP_038544218.1  ETS domain-containing protein Elk-3 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PXR3, A0A8P0THH1
    Related
    ENSCAFP00845034996.1, ENSCAFT00845044664.1
    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

  2. XM_038688289.1 → XP_038544217.1  ETS domain-containing protein Elk-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LBH6, A0A8C0RZ25, A0A8I3PXT8
    Related
    ENSCAFP00845035044.1, ENSCAFT00845044724.1
    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    35888292..35952734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038496320.1 → XP_038352248.1  ETS domain-containing protein Elk-3 isoform X2

    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

  2. XM_038496319.1 → XP_038352247.1  ETS domain-containing protein Elk-3 isoform X1

    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    35983301..36047655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038622620.1 → XP_038478548.1  ETS domain-containing protein Elk-3 isoform X2

    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

  2. XM_038622619.1 → XP_038478547.1  ETS domain-containing protein Elk-3 isoform X1

    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    36246490..36311229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038558704.1 → XP_038414632.1  ETS domain-containing protein Elk-3 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PXR3, A0A8P0THH1
    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

  2. XM_038558703.1 → XP_038414631.1  ETS domain-containing protein Elk-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LBH6, A0A8C0RZ25, A0A8I3PXT8
    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    36336857..36401032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038451684.1 → XP_038307612.1  ETS domain-containing protein Elk-3 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PXR3, A0A8P0THH1
    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain

  2. XM_539730.7 → XP_539730.2  ETS domain-containing protein Elk-3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LBH6, A0A8C0RZ25, A0A8I3PXT8
    Conserved Domains (1) summary
    smart00413
    Location:19 → 88
    ETS; erythroblast transformation specific domain
Nucleotide Protein
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