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IFNB1 interferon beta 1 [ Canis lupus familiaris (dog) ]

Gene ID: 481558, updated on 5-Mar-2024

Summary

Official Symbol
IFNB1provided by VGNC
Official Full Name
interferon beta 1provided by VGNC
Primary source
VGNC:VGNC:82287
See related
Ensembl:ENSCAFG00845016293
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (41610249..41610809, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (39330806..39331366, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (40726193..40726753, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (40302366..40302926, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (40090657..40091217, complement)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyacyl-CoA dehydratase 4 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC111097941 Neighboring gene interferon alpha-2-like Neighboring gene uncharacterized LOC119873922 Neighboring gene interferon, alpha 5

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables type I interferon receptor binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
interferon beta
Names
interferon, beta 1, fibroblast
interferon-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135787.1NP_001129259.1  interferon beta precursor

    See identical proteins and their annotated locations for NP_001129259.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ194477
    UniProtKB/TrEMBL
    A0A8C0MFP8, A0A8P0N4T6, B6E116, F6PK75
    Related
    ENSCAFP00845022775.1, ENSCAFT00845028946.1
    Conserved Domains (1) summary
    pfam00143
    Location:48177
    Interferon; Interferon alpha/beta domain

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    41610249..41610809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    40302366..40302926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    40090657..40091217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    40726193..40726753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39330806..39331366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)