CSF2RB colony stimulating factor 2 receptor subunit beta [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: CSF2RBprovided by VGNC
Official Full Name: colony stimulating factor 2 receptor subunit betaprovided by VGNC
Primary source: VGNC:VGNC:39656
See related: Ensembl:ENSCAFG00845008045
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	10	NC_051814.1 (28333755..28358851, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	10	NC_006592.4 (27496146..27521244, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	10	NC_049231.1 (28542588..28567688, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	10	NC_049270.1 (28055276..28080375, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	10	NC_049751.1 (28363777..28388879, complement)

Chromosome 10 - NC_051814.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cytokine receptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cytokine-mediated signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed
involved_in immunoglobulin mediated immune response	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in external side of plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cytokine receptor common subunit beta

Names: colony stimulating factor 2 receptor beta common subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051814.1 Reference ROS_Cfam_1.0

Range

28333755..28358851 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038679963.1 → XP_038535891.1 cytokine receptor common subunit beta

UniProtKB/TrEMBL

A0A8C0MMA9, A0A8C0QVA4, A0A8C0S8R4, A0A8I3N4F4, A0A8I3RVV0

Related

ENSCAFP00845011050.1, ENSCAFT00845014251.1

Conserved Domains (4) summary

PHA03247
Location:532 → 855

PHA03247; large tegument protein UL36; Provisional

cd00063
Location:353 → 433

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:134 → 225

fn3; Fibronectin type III domain

cl21522
Location:245 → 336

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

Alternate UMICH_Zoey_3.1

Genomic

NC_049270.1 Alternate UMICH_Zoey_3.1

Range

28055276..28080375 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038488709.1 → XP_038344637.1 cytokine receptor common subunit beta

Conserved Domains (4) summary

PHA03247
Location:532 → 855

PHA03247; large tegument protein UL36; Provisional

cd00063
Location:353 → 433

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:134 → 225

fn3; Fibronectin type III domain

cl21522
Location:245 → 336

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049751.1 Alternate UNSW_CanFamBas_1.0

Range

28363777..28388879 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038614603.1 → XP_038470531.1 cytokine receptor common subunit beta

Conserved Domains (4) summary

PHA03247
Location:532 → 855

PHA03247; large tegument protein UL36; Provisional

cd00063
Location:353 → 433

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:134 → 225

fn3; Fibronectin type III domain

cl21522
Location:245 → 336

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049231.1 Alternate UU_Cfam_GSD_1.0

Range

28542588..28567688 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038550672.1 → XP_038406600.1 cytokine receptor common subunit beta

UniProtKB/TrEMBL

A0A8C0MMA9, A0A8C0QVA4, A0A8C0S8R4, A0A8I3N4F4, A0A8I3RVV0

Conserved Domains (4) summary

PHA03247
Location:532 → 855

PHA03247; large tegument protein UL36; Provisional

cd00063
Location:353 → 433

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:134 → 225

fn3; Fibronectin type III domain

cl21522
Location:245 → 336

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

27496146..27521244 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_538397.7 → XP_538397.4 cytokine receptor common subunit beta

UniProtKB/TrEMBL

A0A8C0MMA9, A0A8C0QVA4, A0A8C0S8R4, A0A8I3N4F4, A0A8I3RVV0

Conserved Domains (4) summary

PHA03247
Location:532 → 855

PHA03247; large tegument protein UL36; Provisional

cd00063
Location:353 → 433

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam00041
Location:134 → 225

fn3; Fibronectin type III domain

cl21522
Location:245 → 336

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...