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TCF20 transcription factor 20 [ Canis lupus familiaris (dog) ]

Gene ID: 481224, updated on 5-Mar-2024

Summary

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Official Symbol
TCF20provided by VGNC
Official Full Name
transcription factor 20provided by VGNC
Primary source
VGNC:VGNC:47192
See related
Ensembl:ENSCAFG00845014889
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (23892727..23995689)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (23082752..23185690)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (24105187..24208139)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (23609985..23712911)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (23929381..24033342)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097638 Neighboring gene NFAT activating protein with ITAM motif 1 Neighboring gene uncharacterized LOC102151248 Neighboring gene uncharacterized LOC111097639 Neighboring gene microRNA mir-8829 Neighboring gene cytochrome P450 2D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    23892727..23995689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038679650.1 → XP_038535578.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YYR0, A0A8I3NJL5, A0A8I3RYF6
    Related
    ENSCAFP00845020999.1, ENSCAFT00845026646.1
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  2. XM_038679651.1 → XP_038535579.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YYR0, A0A8I3NJL5, A0A8I3RYF6
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  3. XM_038679649.1 → XP_038535577.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    A0A8I3NJL5
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  4. XM_038679652.1 → XP_038535580.1  transcription factor 20 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SQN2, A0A8I3NJL5, A0A8P0N479
    Related
    ENSCAFP00845020977.1, ENSCAFT00845026620.1
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    23609985..23712911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038488411.1 → XP_038344339.1  transcription factor 20 isoform X2

    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  2. XM_038488413.1 → XP_038344341.1  transcription factor 20 isoform X2

    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  3. XM_038488410.1 → XP_038344338.1  transcription factor 20 isoform X1

    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  4. XM_038488414.1 → XP_038344342.1  transcription factor 20 isoform X3

    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    23929381..24033342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038614307.1 → XP_038470235.1  transcription factor 20 isoform X2

  2. XM_038614308.1 → XP_038470236.1  transcription factor 20 isoform X2

  3. XM_038614306.1 → XP_038470234.1  transcription factor 20 isoform X1

  4. XM_038614309.1 → XP_038470237.1  transcription factor 20 isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    24105187..24208139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038550333.1 → XP_038406261.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YYR0, A0A8I3NJL5, A0A8I3RYF6
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  2. XM_038550334.1 → XP_038406262.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YYR0, A0A8I3NJL5, A0A8I3RYF6
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  3. XM_038550331.1 → XP_038406259.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    A0A8I3NJL5
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  4. XM_038550335.1 → XP_038406263.1  transcription factor 20 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SQN2, A0A8I3NJL5, A0A8P0N479
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    23082752..23185690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038637661.1 → XP_038493589.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YYR0, A0A8I3NJL5, A0A8I3RYF6
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  2. XM_038637671.1 → XP_038493599.1  transcription factor 20 isoform X2

    UniProtKB/TrEMBL
    A0A8C0YYR0, A0A8I3NJL5, A0A8I3RYF6
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  3. XM_022424348.1 → XP_022280056.1  transcription factor 20 isoform X1

    UniProtKB/TrEMBL
    A0A8I3NJL5
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)

  4. XM_014117304.1 → XP_013972779.1  transcription factor 20 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SQN2, A0A8I3NJL5, A0A8P0N479
    Conserved Domains (1) summary
    cd15699
    Location:1704 → 1931
    ePHD_TCF20; Extended PHD finger (ePHD) found in transcription factor 20 (TCF-20)
Nucleotide Protein
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