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GLI1 GLI family zinc finger 1 [ Canis lupus familiaris (dog) ]

Gene ID: 481126, updated on 5-Mar-2024

Summary

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Official Symbol
GLI1provided by VGNC
Official Full Name
GLI family zinc finger 1provided by VGNC
Primary source
VGNC:VGNC:41256
See related
Ensembl:ENSCAFG00845011836
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (1574108..1585023)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (1628322..1639223)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (1919034..1929946)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (1552194..1563093)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (1793705..1804582)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene inhibin subunit beta C Neighboring gene inhibin subunit beta E Neighboring gene Rho GTPase activating protein 9 Neighboring gene methionyl-tRNA synthetase 1 Neighboring gene DNA damage inducible transcript 3 Neighboring gene methyl-CpG binding domain protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein GLI1; LOW QUALITY PROTEIN: zinc finger protein GLI1
Names
glioma-associated oncogene homolog 1 (zinc finger protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    1574108..1585023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038679094.1 → XP_038535022.1  zinc finger protein GLI1

    UniProtKB/TrEMBL
    A0A8C0MKR6, A0A8C0SIL4, A0A8I3NLD9
    Related
    ENSCAFP00845016568.1, ENSCAFT00845021074.1
    Conserved Domains (5) summary
    PHA03247
    Location:401 → 845
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:83 → 363
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:296 → 386
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:302 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16159
    Location:235 → 264
    FOXP-CC; FOXP coiled-coil domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    1552194..1563093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038487877.1 → XP_038343805.1  LOW QUALITY PROTEIN: zinc finger protein GLI1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    1793705..1804582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038613734.1 → XP_038469662.1  zinc finger protein GLI1

    Conserved Domains (5) summary
    PHA03247
    Location:401 → 845
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:83 → 363
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:296 → 386
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:302 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16159
    Location:235 → 264
    FOXP-CC; FOXP coiled-coil domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    1919034..1929946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038549772.1 → XP_038405700.1  zinc finger protein GLI1

    UniProtKB/TrEMBL
    A0A8C0MKR6, A0A8C0SIL4, A0A8I3NLD9
    Conserved Domains (5) summary
    PHA03247
    Location:401 → 845
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:83 → 363
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:296 → 386
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:302 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16159
    Location:235 → 264
    FOXP-CC; FOXP coiled-coil domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    1628322..1639223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_538247.7 → XP_538247.2  zinc finger protein GLI1

    UniProtKB/TrEMBL
    A0A8C0MKR6, A0A8C0SIL4, A0A8I3NLD9
    Conserved Domains (5) summary
    PHA03247
    Location:401 → 845
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:83 → 363
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:296 → 386
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:302 → 324
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam16159
    Location:235 → 264
    FOXP-CC; FOXP coiled-coil domain
Nucleotide Protein
Heading Accession and Version

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