GATA1 GATA binding protein 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: GATA1provided by VGNC
Official Full Name: GATA binding protein 1provided by VGNC
Primary source: VGNC:VGNC:111507
See related: Ensembl:ENSCAFG00845030905
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: X

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	X	NC_051843.1 (42127527..42134488)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	X	NC_006621.4 (16366765..16373724)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	X	NC_049260.1 (42196190..42203150)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	X	NC_049299.1 (42113779..42120737)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	X	NC_049780.1 (42102035..42108995)

Chromosome X - NC_051843.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Markers

GDB:574073 (e-PCR)
- UniSTS:157796

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell fate commitment	IEA Inferred from Electronic Annotation more info	PubMed
involved_in negative regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: erythroid transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051843.1 Reference ROS_Cfam_1.0

Range

42127527..42134488

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038449959.1 → XP_038305887.1 erythroid transcription factor

UniProtKB/TrEMBL

A0A8C0LB17, A0A8C0S1L4, A0A8I3QVV2

Related

ENSCAFP00845043195.1, ENSCAFT00845054929.1

Conserved Domains (1) summary

cd00202
Location:202 → 246

ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Alternate UMICH_Zoey_3.1

Genomic

NC_049299.1 Alternate UMICH_Zoey_3.1

Range

42113779..42120737

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038523408.1 → XP_038379336.1 erythroid transcription factor

Conserved Domains (1) summary

cd00202
Location:202 → 246

ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049780.1 Alternate UNSW_CanFamBas_1.0

Range

42102035..42108995

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038651890.1 → XP_038507818.1 erythroid transcription factor

Conserved Domains (1) summary

cd00202
Location:202 → 246

ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049260.1 Alternate UU_Cfam_GSD_1.0

Range

42196190..42203150

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038587377.1 → XP_038443305.1 erythroid transcription factor

UniProtKB/TrEMBL

A0A8C0LB17, A0A8C0S1L4, A0A8I3QVV2

Conserved Domains (1) summary

cd00202
Location:202 → 246

ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

16366765..16373724

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_538026.6 → XP_538026.2 erythroid transcription factor

UniProtKB/TrEMBL

A0A8C0LB17, A0A8C0S1L4, A0A8I3QVV2

Conserved Domains (1) summary

cd00202
Location:202 → 246

ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C